1 Response_reg#1
3-116 aa · 114 aa · 21.4% of protein
Raw token
Response_reg:3:2.7e-26:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS01620
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_003435265
ClassRRTypeunclassifiedLength533 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435265#DWY69_RS01620Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length533 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 533 aa (36.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa533 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-474 aa · 41 aa · 7.7% of protein
Raw token
HTH_AraC:434:0.000000000361:474:41:423 HTH_AraC#3
487-525 aa · 39 aa · 7.3% of protein
Raw token
HTH_AraC:487:0.000000519:525:39:42- Raw architecture: Response_reg:3:2.7e-26:116:114:111#HTH_AraC:434:0.000000000361:474:41:42#HTH_AraC:487:0.000000519:525:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435265::NZ_QVLU01000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span417812-421115Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_01620RefSeq proteinWP_025489104.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00014Context members
DWY69_RS01620DWY69_RS01625
Partner locus tags
DWY69_RS01620DWY69_RS01625
Partner old locus tags
DWY69_01620DWY69_01625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025489104.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS01620Primary locus identifier stored in the genes table.
Old locus tagDWY69_01620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval417 812-419 413 nt1 602 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span417 812-421 115 ntGCF_003435265::NZ_QVLU01000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span417 812-421 115 nt3 304 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
417 812 nt421 115 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY69_RS01620GCF_003435265#DWY69_RS01620
RRunclassifiedCurrent focus
417 812-419 413 nt · Reverse (-)
DWY69_RS01625GCF_003435265#DWY69_RS01625
HKClassic
419 391-421 115 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS01620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0106397
Simplified PFAM architecture for RROC_0106397
PFAM domain coverage: 192 / 533 aa (36.0%)
1 aa533 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[3-115] | HTH_AraC[434-474] | HTH_AraC[488-525]
- Domain count: 3
- Matched identifier: RROC_0106397
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; HTH_AraC 434-474 ; HTH_AraC 434-474 ; HTH_AraC 488-525 ; HTH_AraC 488-525
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS01620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key