1 Response_reg#1
4-121 aa · 118 aa · 25.3% of protein
Raw token
Response_reg:4:5.36e-24:121:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS01355
Response regulator, unclassified
Eisenbergiella massiliensis · GCF_003435265
ClassRRTypeunclassifiedLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003435265#DWY69_RS01355Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 466 aa (41.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa466 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
371-407 aa · 37 aa · 7.9% of protein
Raw token
HTH_AraC:371:0.0000085:407:37:423 HTH_AraC#3
421-459 aa · 39 aa · 8.4% of protein
Raw token
HTH_AraC:421:0.000000000294:459:39:42- Raw architecture: Response_reg:4:5.36e-24:121:118:111#HTH_AraC:371:0.0000085:407:37:42#HTH_AraC:421:0.000000000294:459:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003435265::NZ_QVLU01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span345000-348135Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_01355RefSeq proteinWP_025489150.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00012Context members
DWY69_RS01350DWY69_RS01355
Partner locus tags
DWY69_RS01350DWY69_RS01355
Partner old locus tags
DWY69_01350DWY69_01355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489150.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3J5N5Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3J5N5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS01355Primary locus identifier stored in the genes table.
Old locus tagDWY69_01355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval346 735-348 135 nt1 401 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span345 000-348 135 ntGCF_003435265::NZ_QVLU01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span345 000-348 135 nt3 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
345 000 nt348 135 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DWY69_RS01350GCF_003435265#DWY69_RS01350
HKClassic
345 000-346 757 nt · Forward (+)
DWY69_RS01355GCF_003435265#DWY69_RS01355
RRunclassifiedCurrent focus
346 735-348 135 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS01355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0221751
Simplified PFAM architecture for RROC_0221751
PFAM domain coverage: 181 / 466 aa (38.8%)
1 aa466 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-106] | HTH_18[382-459]
- Domain count: 2
- Matched identifier: RROC_0221751
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106 ; HTH_18 382-459 ; HTH_18 382-459
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS01355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key