1 Response_reg#1
4-117 aa · 114 aa · 48.1% of protein
Raw token
Response_reg:4:6.25e-18:117:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS00780
Response regulator LytTR family
Eisenbergiella massiliensis · GCF_003435265
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003435265#DWY69_RS00780Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 237 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-229 aa · 85 aa · 35.9% of protein
Raw token
LytTR:145:2.72e-22:229:91:98- Raw architecture: Response_reg:4:6.25e-18:117:118:111#LytTR:145:2.72e-22:229:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003435265::NZ_QVLU01000001.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span197868-198581Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_00780RefSeq proteinWP_117530438.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00009Context members
DWY69_RS00780
Partner locus tags
DWY69_RS00780
Partner old locus tags
DWY69_00780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117530438.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3J591Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3J591_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS00780Primary locus identifier stored in the genes table.
Old locus tagDWY69_00780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval197 868-198 581 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span197 868-198 581 ntGCF_003435265::NZ_QVLU01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span197 868-198 581 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
197 868 nt198 581 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DWY69_RS00780GCF_003435265#DWY69_RS00780
RRLytTRCurrent focus
197 868-198 581 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS00780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0968415
Simplified PFAM architecture for RROC_0968415
PFAM domain coverage: 197 / 237 aa (83.1%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[143-226]
- Domain count: 2
- Matched identifier: RROC_0968415
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 143-226 ; LytTR 143-226
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS00780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key