1 Response_reg#1
3-111 aa · 109 aa · 50.0% of protein
Raw token
Response_reg:3:3.99e-29:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DWY69_RS00355
Response regulator OmpR family
Eisenbergiella massiliensis · GCF_003435265
ClassRRTypeOmpRLength218 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_003435265#DWY69_RS00355Stable P2CS identifier used across views.
GenomeGCF_003435265Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eisenbergiella
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length218 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 218 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa218 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-216 aa · 71 aa · 32.6% of protein
Raw token
Trans_reg_C:146:9.26e-26:216:75:77- Raw architecture: Response_reg:3:3.99e-29:111:111:111#Trans_reg_C:146:9.26e-26:216:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_003435265::NZ_QVLU01000001.1::G00002
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span93966-98311Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDWY69_00355RefSeq proteinWP_025489305.1
Context group ID
GCF_003435265::NZ_QVLU01000001.1::G00002Context members
DWY69_RS00350DWY69_RS00355DWY69_RS00360
Partner locus tags
DWY69_RS00350DWY69_RS00355DWY69_RS00360
Partner old locus tags
DWY69_00350DWY69_00355DWY69_00360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025489305.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3I7W0Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3I7W0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDWY69_RS00355Primary locus identifier stored in the genes table.
Old locus tagDWY69_00355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVLU01000001.1Sequence record reported by the local genomic context database.
Genomic interval94 780-95 436 nt657 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 966-98 311 ntGCF_003435265::NZ_QVLU01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003435265::NZ_QVLU01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVLU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span93 966-98 311 nt4 346 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 966 nt98 311 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DWY69_RS00350GCF_003435265#DWY69_RS00350
HKClassic
93 966-94 790 nt · Reverse (-)
DWY69_RS00355GCF_003435265#DWY69_RS00355
RROmpRCurrent focus
94 780-95 436 nt · Reverse (-)
DWY69_RS00360GCF_003435265#DWY69_RS00360
HKHybrid
95 474-98 311 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435265#DWY69_RS00355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1819845
Simplified PFAM architecture for RROC_1819845
PFAM domain coverage: 180 / 218 aa (82.6%)
1 aa218 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[146-216]
- Domain count: 2
- Matched identifier: RROC_1819845
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 146-216 ; Trans_reg_C 146-216
Cluster members and taxonomy
Representative gene: GCF_003435265#DWY69_RS00355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 720 294 · GCF_003435265
AssemblyASM343526v1 · Scaffoldhaploid
Genome composition7 012 480 bp · 48,0% GCEisenbergiella massiliensis
Signal transduction countsGenes 305 · HK 151 · RR 149CheA 1 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEisenbergiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eisenbergiella
Related genes
Preview from the same derived genome key