1 dCache_1#1
43-283 aa · 241 aa · 40.6% of protein
Raw token
dCache_1:43:0.00000000013:283:250:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS21590
Histidine kinase, Classic
Hungatella effluvii · GCF_003201875
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003201875#DFR60_RS21590Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage498 / 593 aa (84.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation4 items
2 HAMP#2
304-369 aa · 66 aa · 11.1% of protein
Raw token
HAMP:304:0.000000000018:369:66:693 His_kinase#3
384-463 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:384:1.83e-32:463:80:804 HATPase_c#4
480-590 aa · 111 aa · 18.7% of protein
Raw token
HATPase_c:480:0.000000015:590:112:109- Raw architecture: dCache_1:43:0.00000000013:283:250:195#HAMP:304:0.000000000018:369:66:69#His_kinase:384:1.83e-32:463:80:80#HATPase_c:480:0.000000015:590:112:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003201875::NZ_QJKD01000013.1::G00106
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span60289-62070Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_11355RefSeq proteinWP_025529330.1
Context group ID
GCF_003201875::NZ_QJKD01000013.1::G00106Context members
DFR60_RS21590
Partner locus tags
DFR60_RS21590
Partner old locus tags
DFR60_11355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025529330.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3Y0Z5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3Y0Z5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS21590Primary locus identifier stored in the genes table.
Old locus tagDFR60_11355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000013.1Sequence record reported by the local genomic context database.
Genomic interval60 289-62 070 nt1 782 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 289-62 070 ntGCF_003201875::NZ_QJKD01000013.1::G00106
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000013.1::G00106Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000013.1All displayed genes belong to this local TCS context.
Neighborhood span60 289-62 070 nt1 782 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 289 nt62 070 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DFR60_RS21590GCF_003201875#DFR60_RS21590
HKClassicCurrent focus
60 289-62 070 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS21590The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1094283
Simplified PFAM architecture for HKOC_1094283
PFAM domain coverage: 480 / 593 aa (80.9%)
1 aa593 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[45-282] | HAMP[318-369] | His_kinase[384-463] | HATPase_c[480-589]
- Domain count: 4
- Matched identifier: HKOC_1094283
- Positioned domains: dCache_1 45-282 ; HAMP 318-369 ; His_kinase 384-463 ; HATPase_c 480-589
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS21590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key