1 HAMP#1
128-199 aa · 72 aa · 16.9% of protein
Raw token
HAMP:128:0.000000112:199:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS00115
Histidine kinase, Classic
Hungatella effluvii · GCF_003201875
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003201875#DFR60_RS00115Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 425 aa (56.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation3 items
2 HisKA#2
210-270 aa · 61 aa · 14.4% of protein
Raw token
HisKA:210:0.0000000000000798:270:61:643 HATPase_c#3
315-422 aa · 108 aa · 25.4% of protein
Raw token
HATPase_c:315:6.75e-26:422:110:109- Raw architecture: HAMP:128:0.000000112:199:72:69#HisKA:210:0.0000000000000798:270:61:64#HATPase_c:315:6.75e-26:422:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003201875::NZ_QJKD01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span28593-30552Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_10123RefSeq proteinWP_110321068.1
Context group ID
GCF_003201875::NZ_QJKD01000001.1::G00003Context members
DFR60_RS00110DFR60_RS00115
Partner locus tags
DFR60_RS00110DFR60_RS00115
Partner old locus tags
DFR60_10122DFR60_10123
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110321068.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YDP0Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YDP0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS00115Primary locus identifier stored in the genes table.
Old locus tagDFR60_10123Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval29 275-30 552 nt1 278 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 593-30 552 ntGCF_003201875::NZ_QJKD01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span28 593-30 552 nt1 960 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 593 nt30 552 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DFR60_RS00110GCF_003201875#DFR60_RS00110
RROmpR
28 593-29 282 nt · Forward (+)
DFR60_RS00115GCF_003201875#DFR60_RS00115
HKClassicCurrent focus
29 275-30 552 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS00115The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2217634
Simplified PFAM architecture for HKOC_2217634
PFAM domain coverage: 167 / 425 aa (39.3%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[211-270] | HATPase_c[315-421]
- Domain count: 2
- Matched identifier: HKOC_2217634
- Positioned domains: HisKA 211-270 ; HATPase_c 315-421
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS00115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key