1 HAMP#1
166-233 aa · 68 aa · 15.2% of protein
Raw token
HAMP:166:0.00000345:233:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS00675
Histidine kinase, Classic
Hungatella effluvii · GCF_003201875
ClassHKTypeClassicLength448 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003201875#DFR60_RS00675Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length448 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage219 / 448 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa448 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-305 aa · 62 aa · 13.8% of protein
Raw token
HisKA:244:0.000000000236:305:62:643 HATPase_c#3
360-448 aa · 89 aa · 19.9% of protein
Raw token
HATPase_c:360:0.0000000366:448:106:109- Raw architecture: HAMP:166:0.00000345:233:68:69#HisKA:244:0.000000000236:305:62:64#HATPase_c:360:0.0000000366:448:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003201875::NZ_QJKD01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span167103-169128Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_101135RefSeq proteinWP_167437469.1
Context group ID
GCF_003201875::NZ_QJKD01000001.1::G00005Context members
DFR60_RS00675DFR60_RS00680
Partner locus tags
DFR60_RS00675DFR60_RS00680
Partner old locus tags
DFR60_101135DFR60_101136
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167437469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS00675Primary locus identifier stored in the genes table.
Old locus tagDFR60_101135Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval167 103-168 449 nt1 347 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span167 103-169 128 ntGCF_003201875::NZ_QJKD01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span167 103-169 128 nt2 026 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
167 103 nt169 128 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DFR60_RS00675GCF_003201875#DFR60_RS00675
HKClassicCurrent focus
167 103-168 449 nt · Reverse (-)
DFR60_RS00680GCF_003201875#DFR60_RS00680
RROmpR
168 442-169 128 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS00675The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1990450
Simplified PFAM architecture for HKOC_1990450
PFAM domain coverage: 103 / 448 aa (23.0%)
1 aa448 aa
HAMPHisKA
- Simplified architecture: HAMP + HisKA
- Raw architecture: HAMP[190-232] | HisKA[245-304]
- Domain count: 2
- Matched identifier: HKOC_1990450
- Positioned domains: HAMP 190-232 ; HisKA 245-304
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS00675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key