1 Response_reg#1
5-106 aa · 102 aa · 19.4% of protein
Raw token
Response_reg:5:1.08e-25:106:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS00585
Response regulator, unclassified
Hungatella effluvii · GCF_003201875
ClassRRTypeunclassifiedLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003201875#DFR60_RS00585Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 525 aa (34.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
433-473 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:433:0.0000000145:473:41:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.0000052:523:37:42- Raw architecture: Response_reg:5:1.08e-25:106:102:111#HTH_AraC:433:0.0000000145:473:41:42#HTH_AraC:487:0.0000052:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003201875::NZ_QJKD01000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144260-147525Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_101117RefSeq proteinWP_025530622.1
Context group ID
GCF_003201875::NZ_QJKD01000001.1::G00004Context members
DFR60_RS00585DFR60_RS00590
Partner locus tags
DFR60_RS00585DFR60_RS00590
Partner old locus tags
DFR60_101117DFR60_101118
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025530622.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YD49Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YD49_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS00585Primary locus identifier stored in the genes table.
Old locus tagDFR60_101117Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval144 260-145 837 nt1 578 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span144 260-147 525 ntGCF_003201875::NZ_QJKD01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span144 260-147 525 nt3 266 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 260 nt147 525 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DFR60_RS00585GCF_003201875#DFR60_RS00585
RRunclassifiedCurrent focus
144 260-145 837 nt · Reverse (-)
DFR60_RS00590GCF_003201875#DFR60_RS00590
HKClassic
145 852-147 525 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS00585The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0119294
Simplified PFAM architecture for RROC_0119294
PFAM domain coverage: 182 / 525 aa (34.7%)
1 aa525 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-107] | HTH_18[446-524]
- Domain count: 2
- Matched identifier: RROC_0119294
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; HTH_18 446-524 ; HTH_18 446-524
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS00585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key