1 HAMP#1
302-375 aa · 74 aa · 12.3% of protein
Raw token
HAMP:302:0.0000000646:375:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS00025
Histidine kinase, Classic
Hungatella effluvii · GCF_003201875
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003201875#DFR60_RS00025Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 604 aa (40.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 His_kinase#2
390-469 aa · 80 aa · 13.2% of protein
Raw token
His_kinase:390:9.45e-32:469:80:803 HATPase_c#3
475-567 aa · 93 aa · 15.4% of protein
Raw token
HATPase_c:475:0.000000000999:567:98:109- Raw architecture: HAMP:302:0.0000000646:375:74:69#His_kinase:390:9.45e-32:469:80:80#HATPase_c:475:0.000000000999:567:98:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003201875::NZ_QJKD01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4823-8165Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_1015RefSeq proteinWP_110321053.1
Context group ID
GCF_003201875::NZ_QJKD01000001.1::G00001Context members
DFR60_RS00025DFR60_RS00030
Partner locus tags
DFR60_RS00025DFR60_RS00030
Partner old locus tags
DFR60_1015DFR60_1016
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110321053.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YBC2Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YBC2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS00025Primary locus identifier stored in the genes table.
Old locus tagDFR60_1015Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval4 823-6 637 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 823-8 165 ntGCF_003201875::NZ_QJKD01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span4 823-8 165 nt3 343 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 823 nt8 165 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DFR60_RS00025GCF_003201875#DFR60_RS00025
HKClassicCurrent focus
4 823-6 637 nt · Forward (+)
DFR60_RS00030GCF_003201875#DFR60_RS00030
RRunclassified
6 609-8 165 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS00025The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033676
Simplified PFAM architecture for HKOC_1033676
PFAM domain coverage: 159 / 604 aa (26.3%)
1 aa604 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[390-469] | HATPase_c[489-567]
- Domain count: 2
- Matched identifier: HKOC_1033676
- Positioned domains: His_kinase 390-469 ; HATPase_c 489-567
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS00025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key