1 Response_reg#1
5-117 aa · 113 aa · 22.1% of protein
Raw token
Response_reg:5:5.62e-28:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS00805
Response regulator, unclassified
Hungatella effluvii · GCF_003201875
ClassRRTypeunclassifiedLength511 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003201875#DFR60_RS00805Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length511 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 511 aa (37.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa511 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
415-456 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:415:0.0000000813:456:42:423 HTH_AraC#3
469-506 aa · 38 aa · 7.4% of protein
Raw token
HTH_AraC:469:0.00000000484:506:38:42- Raw architecture: Response_reg:5:5.62e-28:117:113:111#HTH_AraC:415:0.0000000813:456:42:42#HTH_AraC:469:0.00000000484:506:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003201875::NZ_QJKD01000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span204112-207479Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_101161RefSeq proteinWP_110321178.1
Context group ID
GCF_003201875::NZ_QJKD01000001.1::G00006Context members
DFR60_RS00805DFR60_RS00810
Partner locus tags
DFR60_RS00805DFR60_RS00810
Partner old locus tags
DFR60_101161DFR60_101162
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110321178.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YF07Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YF07_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS00805Primary locus identifier stored in the genes table.
Old locus tagDFR60_101161Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval204 112-205 647 nt1 536 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span204 112-207 479 ntGCF_003201875::NZ_QJKD01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span204 112-207 479 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
204 112 nt207 479 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DFR60_RS00805GCF_003201875#DFR60_RS00805
RRunclassifiedCurrent focus
204 112-205 647 nt · Reverse (-)
DFR60_RS00810GCF_003201875#DFR60_RS00810
HKClassic
205 644-207 479 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS00805The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0145230
Simplified PFAM architecture for RROC_0145230
PFAM domain coverage: 272 / 511 aa (53.2%)
1 aa511 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-116] | GGDEF_2[185-264] | HTH_18[428-507]
- Domain count: 3
- Matched identifier: RROC_0145230
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; GGDEF_2 185-264 ; GGDEF_2 185-264 ; HTH_18 428-507 ; HTH_18 428-507
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS00805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key