1 Response_reg#1
5-119 aa · 115 aa · 21.5% of protein
Raw token
Response_reg:5:1.34e-21:119:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DFR60_RS00095
Response regulator, unclassified
Hungatella effluvii · GCF_003201875
ClassRRTypeunclassifiedLength535 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003201875#DFR60_RS00095Stable P2CS identifier used across views.
GenomeGCF_003201875Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length535 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 535 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa535 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.0000000508:475:42:423 HTH_AraC#3
489-525 aa · 37 aa · 6.9% of protein
Raw token
HTH_AraC:489:0.000000113:525:37:42- Raw architecture: Response_reg:5:1.34e-21:119:115:111#HTH_AraC:434:0.0000000508:475:42:42#HTH_AraC:489:0.000000113:525:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003201875::NZ_QJKD01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22366-25835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDFR60_10119RefSeq proteinWP_110321064.1
Context group ID
GCF_003201875::NZ_QJKD01000001.1::G00002Context members
DFR60_RS00090DFR60_RS00095
Partner locus tags
DFR60_RS00090DFR60_RS00095
Partner old locus tags
DFR60_10118DFR60_10119
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_110321064.1Primary protein accession used for annex mappings.
UniProt accessionA0A2V3YBG6Primary UniProt accession resolved in the annex database.
UniProt IDA0A2V3YBG6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDFR60_RS00095Primary locus identifier stored in the genes table.
Old locus tagDFR60_10119Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QJKD01000001.1Sequence record reported by the local genomic context database.
Genomic interval24 228-25 835 nt1 608 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 366-25 835 ntGCF_003201875::NZ_QJKD01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003201875::NZ_QJKD01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QJKD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span22 366-25 835 nt3 470 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 366 nt25 835 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DFR60_RS00090GCF_003201875#DFR60_RS00090
HKClassic
22 366-24 231 nt · Forward (+)
DFR60_RS00095GCF_003201875#DFR60_RS00095
RRunclassifiedCurrent focus
24 228-25 835 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003201875#DFR60_RS00095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0100984
Simplified PFAM architecture for RROC_0100984
PFAM domain coverage: 324 / 535 aa (60.6%)
1 aa535 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-118] | GGDEF_2[159-290] | HTH_18[448-525]
- Domain count: 3
- Matched identifier: RROC_0100984
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; GGDEF_2 159-290 ; GGDEF_2 159-290 ; HTH_18 448-525 ; HTH_18 448-525
Cluster members and taxonomy
Representative gene: GCF_003201875#DFR60_RS00095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 096 246 · GCF_003201875
AssemblyASM320187v1 · Scaffoldreference genome · haploid
Genome composition6 863 335 bp · 49,0% GCHungatella effluvii
Signal transduction countsGenes 249 · HK 123 · RR 123CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key