1 Response_reg#1
5-113 aa · 109 aa · 47.2% of protein
Raw token
Response_reg:5:5.3e-35:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS05145
Response regulator OmpR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_002441855#CPZ25_RS05145Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:148:2.25e-33:224:77:77- Raw architecture: Response_reg:5:5.3e-35:113:110:111#Trans_reg_C:148:2.25e-33:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_002441855::NZ_CP029487.1::G00027
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span1029175-1033856Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_005185RefSeq proteinWP_096919636.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00027Context members
CPZ25_RS05140CPZ25_RS05145CPZ25_RS05150CPZ25_RS05155
Partner locus tags
CPZ25_RS05140CPZ25_RS05145CPZ25_RS05150CPZ25_RS05155
Partner old locus tags
CPZ25_005180CPZ25_005185CPZ25_005190CPZ25_005195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919636.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C5K1Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C5K1_EUBMLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS05145Primary locus identifier stored in the genes table.
Old locus tagCPZ25_005185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval1 030 667-1 031 362 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 029 175-1 033 856 ntGCF_002441855::NZ_CP029487.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span1 029 175-1 033 856 nt4 682 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 029 175 nt1 033 856 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
CPZ25_RS05140GCF_002441855#CPZ25_RS05140
HKClassic
1 029 175-1 030 683 nt · Reverse (-)
CPZ25_RS05145GCF_002441855#CPZ25_RS05145
RROmpRCurrent focus
1 030 667-1 031 362 nt · Reverse (-)
CPZ25_RS05150GCF_002441855#CPZ25_RS05150
HKClassic
1 031 815-1 033 206 nt · Reverse (-)
CPZ25_RS05155GCF_002441855#CPZ25_RS05155
RROmpR
1 033 197-1 033 856 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS05145The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1166029
Simplified PFAM architecture for RROC_1166029
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1166029
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS05145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key