1 HisKA#1
541-607 aa · 67 aa · 7.3% of protein
Raw token
HisKA:541:2.76e-17:607:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS00260
Histidine kinase, Hybrid
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeHybridLength924 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS00260Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length924 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage304 / 924 aa (32.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa924 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
654-772 aa · 119 aa · 12.9% of protein
Raw token
HATPase_c:654:3.76e-31:772:119:1093 Response_reg#3
802-919 aa · 118 aa · 12.8% of protein
Raw token
Response_reg:802:8.02e-34:919:118:111- Raw architecture: HisKA:541:2.76e-17:607:67:64#HATPase_c:654:3.76e-31:772:119:109#Response_reg:802:8.02e-34:919:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span35447-38221Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_000260RefSeq proteinWP_096919304.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00001Context members
CPZ25_RS00260
Partner locus tags
CPZ25_RS00260
Partner old locus tags
CPZ25_000260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919304.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C373Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C373_EUBMLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS00260Primary locus identifier stored in the genes table.
Old locus tagCPZ25_000260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval35 447-38 221 nt2 775 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 447-38 221 ntGCF_002441855::NZ_CP029487.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span35 447-38 221 nt2 775 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 447 nt38 221 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS00260GCF_002441855#CPZ25_RS00260
HKHybridCurrent focus
35 447-38 221 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS00260The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0361941
Simplified PFAM architecture for HKOC_0361941
PFAM domain coverage: 302 / 924 aa (32.7%)
1 aa924 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[541-607] | HATPase_c[654-771] | Response_reg[802-918]
- Domain count: 3
- Matched identifier: HKOC_0361941
- Positioned domains: HisKA 541-607 ; HATPase_c 654-771 ; Response_reg 802-918
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS00260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key