1 PAS_3#1
157-238 aa · 82 aa · 5.7% of protein
Raw token
PAS_3:157:0.0000000000025:238:90:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS00840
Histidine kinase, Hybrid
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeHybridLength1427 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_002441855#CPZ25_RS00840Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1427 aaLength used to scale native and Biotite-like views.
Annotated domains66 with usable coordinates.
Domain coverage543 / 1427 aa (38.1%)Merged over positioned domains only.
Domain description3 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1427 aa
Domain-by-domain annotation6 items
2 PAS_3#2
289-362 aa · 74 aa · 5.2% of protein
Raw token
PAS_3:289:0.000000000000548:362:74:893 PAS_3#3
531-619 aa · 89 aa · 6.2% of protein
Raw token
PAS_3:531:0.0000000000678:619:90:894 HisKA#4
1044-1108 aa · 65 aa · 4.6% of protein
Raw token
HisKA:1044:1.29e-17:1108:65:645 HATPase_c#5
1157-1273 aa · 117 aa · 8.2% of protein
Raw token
HATPase_c:1157:3.4e-30:1273:117:1096 Response_reg#6
1304-1419 aa · 116 aa · 8.1% of protein
Raw token
Response_reg:1304:3.05e-24:1419:116:111- Raw architecture: PAS_3:157:0.0000000000025:238:90:89#PAS_3:289:0.000000000000548:362:74:89#PAS_3:531:0.0000000000678:619:90:89#HisKA:1044:1.29e-17:1108:65:64#HATPase_c:1157:3.4e-30:1273:117:109#Response_reg:1304:3.05e-24:1419:116:111
- Domain description: 3 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_002441855::NZ_CP029487.1::G00007
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span143705-147988Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_000855RefSeq proteinWP_096919374.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00007Context members
CPZ25_RS00840
Partner locus tags
CPZ25_RS00840
Partner old locus tags
CPZ25_000855
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919374.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C3W9Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C3W9_EUBMLDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS00840Primary locus identifier stored in the genes table.
Old locus tagCPZ25_000855Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval143 705-147 988 nt4 284 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span143 705-147 988 ntGCF_002441855::NZ_CP029487.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span143 705-147 988 nt4 284 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
143 705 nt147 988 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CPZ25_RS00840GCF_002441855#CPZ25_RS00840
HKHybridCurrent focus
143 705-147 988 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS00840The current gene is the representative for this cluster.
PFAM architecturePAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg6 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0060212
Simplified PFAM architecture for HKOC_0060212
PFAM domain coverage: 538 / 1427 aa (37.7%)
1 aa1427 aa
PAS_3PAS_3PAS_3HisKAHATPase_cResponse_reg
- Simplified architecture: PAS_3 + PAS_3 + PAS_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: PAS_3[158-239] | PAS_3[290-362] | PAS_3[531-618] | HisKA[1044-1108] | HATPase_c[1157-1272] | Response_reg[1304-1417]
- Domain count: 6
- Matched identifier: HKOC_0060212
- Positioned domains: PAS_3 158-239 ; PAS_3 290-362 ; PAS_3 531-618 ; HisKA 1044-1108 ; HATPase_c 1157-1272 ; Response_reg 1304-1417
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS00840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key