1 Response_reg#1
9-119 aa · 111 aa · 48.5% of protein
Raw token
Response_reg:9:6.01e-31:119:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS00680
Response regulator OmpR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS00680Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-225 aa · 74 aa · 32.3% of protein
Raw token
Trans_reg_C:152:0.0000000000000183:225:78:77- Raw architecture: Response_reg:9:6.01e-31:119:112:111#Trans_reg_C:152:0.0000000000000183:225:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span116813-118859Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_000695RefSeq proteinWP_096919351.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00004Context members
CPZ25_RS00675CPZ25_RS00680
Partner locus tags
CPZ25_RS00675CPZ25_RS00680
Partner old locus tags
CPZ25_000690CPZ25_000695
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919351.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C5Q2Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C5Q2_EUBMLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS00680Primary locus identifier stored in the genes table.
Old locus tagCPZ25_000695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval118 170-118 859 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span116 813-118 859 ntGCF_002441855::NZ_CP029487.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span116 813-118 859 nt2 047 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
116 813 nt118 859 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS00675GCF_002441855#CPZ25_RS00675
HKClassic
116 813-118 168 nt · Forward (+)
CPZ25_RS00680GCF_002441855#CPZ25_RS00680
RROmpRCurrent focus
118 170-118 859 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS00680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1257872
Simplified PFAM architecture for RROC_1257872
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-118] | Trans_reg_C[152-225]
- Domain count: 2
- Matched identifier: RROC_1257872
- Positioned domains: Response_reg 9-118 ; Response_reg 9-118 ; Trans_reg_C 152-225 ; Trans_reg_C 152-225
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS00680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key