1 HisKA#1
242-306 aa · 65 aa · 13.5% of protein
Raw token
HisKA:242:3.45e-16:306:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS03945
Histidine kinase, Classic
Eubacterium maltosivorans · GCF_002441855
ClassHKTypeClassicLength482 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS03945Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length482 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 482 aa (36.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa482 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
354-464 aa · 111 aa · 23.0% of protein
Raw token
HATPase_c:354:2.21e-22:464:113:109- Raw architecture: HisKA:242:3.45e-16:306:65:64#HATPase_c:354:2.21e-22:464:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span787243-789399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_003970RefSeq proteinWP_096919810.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00024Context members
CPZ25_RS03945CPZ25_RS03950
Partner locus tags
CPZ25_RS03945CPZ25_RS03950
Partner old locus tags
CPZ25_003970CPZ25_003975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_096919810.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C731Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C731_EUBMLDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS03945Primary locus identifier stored in the genes table.
Old locus tagCPZ25_003970Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval787 243-788 691 nt1 449 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span787 243-789 399 ntGCF_002441855::NZ_CP029487.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span787 243-789 399 nt2 157 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
787 243 nt789 399 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS03945GCF_002441855#CPZ25_RS03945
HKClassicCurrent focus
787 243-788 691 nt · Reverse (-)
CPZ25_RS03950GCF_002441855#CPZ25_RS03950
RROmpR
788 704-789 399 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS03945The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1604175
Simplified PFAM architecture for HKOC_1604175
PFAM domain coverage: 173 / 482 aa (35.9%)
1 aa482 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[243-305] | HATPase_c[354-463]
- Domain count: 2
- Matched identifier: HKOC_1604175
- Positioned domains: HisKA 243-305 ; HATPase_c 354-463
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS03945
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key