1 Response_reg#1
4-116 aa · 113 aa · 48.5% of protein
Raw token
Response_reg:4:4.6e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CPZ25_RS01445
Response regulator OmpR family
Eubacterium maltosivorans · GCF_002441855
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_002441855#CPZ25_RS01445Stable P2CS identifier used across views.
GenomeGCF_002441855Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 233 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-225 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:151:3.33e-37:225:77:77- Raw architecture: Response_reg:4:4.6e-29:116:113:111#Trans_reg_C:151:3.33e-37:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_002441855::NZ_CP029487.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span289478-291936Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCPZ25_001460RefSeq proteinWP_058694952.1
Context group ID
GCF_002441855::NZ_CP029487.1::G00011Context members
CPZ25_RS01445CPZ25_RS01450
Partner locus tags
CPZ25_RS01445CPZ25_RS01450
Partner old locus tags
CPZ25_001460CPZ25_001465
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_058694952.1Primary protein accession used for annex mappings.
UniProt accessionA0A4P9C426Primary UniProt accession resolved in the annex database.
UniProt IDA0A4P9C426_EUBMLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCPZ25_RS01445Primary locus identifier stored in the genes table.
Old locus tagCPZ25_001460Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP029487.1Sequence record reported by the local genomic context database.
Genomic interval289 478-290 179 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 478-291 936 ntGCF_002441855::NZ_CP029487.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_002441855::NZ_CP029487.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP029487.1All displayed genes belong to this local TCS context.
Neighborhood span289 478-291 936 nt2 459 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 478 nt291 936 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CPZ25_RS01445GCF_002441855#CPZ25_RS01445
RROmpRCurrent focus
289 478-290 179 nt · Forward (+)
CPZ25_RS01450GCF_002441855#CPZ25_RS01450
HKClassic
290 176-291 936 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002441855#CPZ25_RS01445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1088332
Simplified PFAM architecture for RROC_1088332
PFAM domain coverage: 188 / 233 aa (80.7%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-116] | Trans_reg_C[151-225]
- Domain count: 2
- Matched identifier: RROC_1088332
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; Trans_reg_C 151-225 ; Trans_reg_C 151-225
Cluster members and taxonomy
Representative gene: GCF_002441855#CPZ25_RS01445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 041 044 · GCF_002441855
AssemblyASM244185v2 · Complete Genomereference genome · haploid
Genome composition4 337 501 bp · 48,0% GCEubacterium maltosivorans
Signal transduction countsGenes 110 · HK 56 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusEubacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Eubacterium
Related genes
Preview from the same derived genome key