1 HAMP#1
138-204 aa · 67 aa · 15.2% of protein
Raw token
HAMP:138:0.000000106:204:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA37_RS04210
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405415
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405415#ARA37_RS04210Stable P2CS identifier used across views.
GenomeGCF_001405415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 440 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.9% of protein
Raw token
HisKA:219:0.00000000165:288:70:643 HATPase_c#3
334-435 aa · 102 aa · 23.2% of protein
Raw token
HATPase_c:334:1.43e-23:435:103:109- Raw architecture: HAMP:138:0.000000106:204:67:69#HisKA:219:0.00000000165:288:70:64#HATPase_c:334:1.43e-23:435:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405415::NZ_CZBR01000003.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4782-6766Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852390_00868RefSeq proteinWP_055156874.1
Context group ID
GCF_001405415::NZ_CZBR01000003.1::G00006Context members
ARA37_RS04210ARA37_RS04215
Partner locus tags
ARA37_RS04210ARA37_RS04215
Partner old locus tags
ERS852390_00868ERS852390_00869
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055156874.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7GJ50Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7GJ50_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA37_RS04210Primary locus identifier stored in the genes table.
Old locus tagERS852390_00868Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBR01000003.1Sequence record reported by the local genomic context database.
Genomic interval4 782-6 104 nt1 323 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 782-6 766 ntGCF_001405415::NZ_CZBR01000003.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405415::NZ_CZBR01000003.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBR01000003.1All displayed genes belong to this local TCS context.
Neighborhood span4 782-6 766 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 782 nt6 766 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA37_RS04210GCF_001405415#ARA37_RS04210
HKClassicCurrent focus
4 782-6 104 nt · Reverse (-)
ARA37_RS04215GCF_001405415#ARA37_RS04215
RROmpR
6 092-6 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS04210The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2072695
Simplified PFAM architecture for HKOC_2072695
PFAM domain coverage: 217 / 440 aa (49.3%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-204] | HisKA[220-287] | HATPase_c[334-436]
- Domain count: 3
- Matched identifier: HKOC_2072695
- Positioned domains: HAMP 159-204 ; HisKA 220-287 ; HATPase_c 334-436
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS04210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405415
Assembly13414_6#17 · Scaffoldhaploid
Genome composition3 326 529 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key