1 Response_reg#1
3-115 aa · 113 aa · 47.3% of protein
Raw token
Response_reg:3:9.23e-34:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA37_RS04135
Response regulator, unclassified
[Ruminococcus] torques · GCF_001405415
ClassRRTypeunclassifiedLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405415#ARA37_RS04135Stable P2CS identifier used across views.
GenomeGCF_001405415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 239 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
146-186 aa · 41 aa · 17.2% of protein
Raw token
HTH_AraC:146:0.00000000644:186:41:423 HTH_AraC#3
203-237 aa · 35 aa · 14.6% of protein
Raw token
HTH_AraC:203:0.00000047:237:35:42- Raw architecture: Response_reg:3:9.23e-34:115:113:111#HTH_AraC:146:0.00000000644:186:41:42#HTH_AraC:203:0.00000047:237:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405415::NZ_CZBR01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span405433-407875Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852390_00856RefSeq proteinWP_020437167.1
Context group ID
GCF_001405415::NZ_CZBR01000002.1::G00005Context members
ARA37_RS04135ARA37_RS04140
Partner locus tags
ARA37_RS04135ARA37_RS04140
Partner old locus tags
ERS852390_00856ERS852390_00857
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020437167.1Primary protein accession used for annex mappings.
UniProt accessionA0A174YA24Primary UniProt accession resolved in the annex database.
UniProt IDA0A174YA24_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA37_RS04135Primary locus identifier stored in the genes table.
Old locus tagERS852390_00856Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBR01000002.1Sequence record reported by the local genomic context database.
Genomic interval405 433-406 152 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span405 433-407 875 ntGCF_001405415::NZ_CZBR01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405415::NZ_CZBR01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBR01000002.1All displayed genes belong to this local TCS context.
Neighborhood span405 433-407 875 nt2 443 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
405 433 nt407 875 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA37_RS04135GCF_001405415#ARA37_RS04135
RRunclassifiedCurrent focus
405 433-406 152 nt · Reverse (-)
ARA37_RS04140GCF_001405415#ARA37_RS04140
HKClassic
406 130-407 875 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS04135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0908914
Simplified PFAM architecture for RROC_0908914
PFAM domain coverage: 189 / 239 aa (79.1%)
1 aa239 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[160-237]
- Domain count: 2
- Matched identifier: RROC_0908914
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; HTH_18 160-237 ; HTH_18 160-237
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS04135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405415
Assembly13414_6#17 · Scaffoldhaploid
Genome composition3 326 529 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key