1 Response_reg#1
4-125 aa · 122 aa · 51.3% of protein
Raw token
Response_reg:4:1.25e-16:125:124:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA37_RS02515
Response regulator LytTR family
[Ruminococcus] torques · GCF_001405415
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405415#ARA37_RS02515Stable P2CS identifier used across views.
GenomeGCF_001405415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 238 aa (88.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-228 aa · 88 aa · 37.0% of protein
Raw token
LytTR:141:0.00000000000393:228:93:98- Raw architecture: Response_reg:4:1.25e-16:125:124:111#LytTR:141:0.00000000000393:228:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405415::NZ_CZBR01000002.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span53083-53799Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852390_00519RefSeq proteinWP_055156539.1
Context group ID
GCF_001405415::NZ_CZBR01000002.1::G00002Context members
ARA37_RS02515
Partner locus tags
ARA37_RS02515
Partner old locus tags
ERS852390_00519
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055156539.1Primary protein accession used for annex mappings.
UniProt accessionA0A174ZY57Primary UniProt accession resolved in the annex database.
UniProt IDA0A174ZY57_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA37_RS02515Primary locus identifier stored in the genes table.
Old locus tagERS852390_00519Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBR01000002.1Sequence record reported by the local genomic context database.
Genomic interval53 083-53 799 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 083-53 799 ntGCF_001405415::NZ_CZBR01000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405415::NZ_CZBR01000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBR01000002.1All displayed genes belong to this local TCS context.
Neighborhood span53 083-53 799 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 083 nt53 799 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA37_RS02515GCF_001405415#ARA37_RS02515
RRLytTRCurrent focus
53 083-53 799 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS02515The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936224
Simplified PFAM architecture for RROC_0936224
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-107] | LytTR[141-230]
- Domain count: 2
- Matched identifier: RROC_0936224
- Positioned domains: Response_reg 4-107 ; Response_reg 4-107 ; LytTR 141-230 ; LytTR 141-230
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS02515
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405415
Assembly13414_6#17 · Scaffoldhaploid
Genome composition3 326 529 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key