1 HAMP#1
196-263 aa · 68 aa · 13.7% of protein
Raw token
HAMP:196:0.000000166:263:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA37_RS03415
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405415
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405415#ARA37_RS03415Stable P2CS identifier used across views.
GenomeGCF_001405415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 495 aa (49.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
268-333 aa · 66 aa · 13.3% of protein
Raw token
HisKA:268:0.000000000000331:333:66:643 HATPase_c#3
381-490 aa · 110 aa · 22.2% of protein
Raw token
HATPase_c:381:3.66e-31:490:110:109- Raw architecture: HAMP:196:0.000000166:263:69:69#HisKA:268:0.000000000000331:333:66:64#HATPase_c:381:3.66e-31:490:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405415::NZ_CZBR01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span247648-249769Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852390_00707RefSeq proteinWP_081019547.1
Context group ID
GCF_001405415::NZ_CZBR01000002.1::G00004Context members
ARA37_RS03415ARA37_RS03420
Partner locus tags
ARA37_RS03415ARA37_RS03420
Partner old locus tags
ERS852390_00707ERS852390_00708
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081019547.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA37_RS03415Primary locus identifier stored in the genes table.
Old locus tagERS852390_00707Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CZBR01000002.1Sequence record reported by the local genomic context database.
Genomic interval247 648-249 135 nt1 488 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span247 648-249 769 ntGCF_001405415::NZ_CZBR01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405415::NZ_CZBR01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CZBR01000002.1All displayed genes belong to this local TCS context.
Neighborhood span247 648-249 769 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
247 648 nt249 769 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA37_RS03415GCF_001405415#ARA37_RS03415
HKClassicCurrent focus
247 648-249 135 nt · Reverse (-)
ARA37_RS03420GCF_001405415#ARA37_RS03420
RROmpR
249 080-249 769 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS03415The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504802
Simplified PFAM architecture for HKOC_1504802
PFAM domain coverage: 175 / 495 aa (35.4%)
1 aa495 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[269-333] | HATPase_c[381-490]
- Domain count: 2
- Matched identifier: HKOC_1504802
- Positioned domains: HisKA 269-333 ; HATPase_c 381-490
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS03415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405415
Assembly13414_6#17 · Scaffoldhaploid
Genome composition3 326 529 bp · 41,0% GC[Ruminococcus] torques
Signal transduction countsGenes 82 · HK 39 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key