1 dCache_1#1
112-303 aa · 192 aa · 30.3% of protein
Raw token
dCache_1:112:0.000000000001:303:200:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS09940
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405315
ClassHKTypeClassicLength634 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405315#AQ985_RS09940Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length634 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage378 / 634 aa (59.6%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa634 aa
Domain-by-domain annotation3 items
2 His_kinase#2
403-482 aa · 80 aa · 12.6% of protein
Raw token
His_kinase:403:1.72e-34:482:80:803 HATPase_c#3
498-603 aa · 106 aa · 16.7% of protein
Raw token
HATPase_c:498:0.00000000000000104:603:109:109- Raw architecture: dCache_1:112:0.000000000001:303:200:195#His_kinase:403:1.72e-34:482:80:80#HATPase_c:498:0.00000000000000104:603:109:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405315::NZ_CYZO01000027.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26726-30269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_02024RefSeq proteinWP_055159202.1
Context group ID
GCF_001405315::NZ_CYZO01000027.1::G00020Context members
AQ985_RS09935AQ985_RS09940
Partner locus tags
AQ985_RS09935AQ985_RS09940
Partner old locus tags
ERS852456_02023ERS852456_02024
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055159202.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS09940Primary locus identifier stored in the genes table.
Old locus tagERS852456_02024Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000027.1Sequence record reported by the local genomic context database.
Genomic interval28 365-30 269 nt1 905 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 726-30 269 ntGCF_001405315::NZ_CYZO01000027.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000027.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000027.1All displayed genes belong to this local TCS context.
Neighborhood span26 726-30 269 nt3 544 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 726 nt30 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ985_RS09935GCF_001405315#AQ985_RS09935
RRunclassified
26 726-28 351 nt · Forward (+)
AQ985_RS09940GCF_001405315#AQ985_RS09940
HKClassicCurrent focus
28 365-30 269 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405315#AQ985_RS09940The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0935881
Simplified PFAM architecture for HKOC_0935881
PFAM domain coverage: 417 / 634 aa (65.8%)
1 aa634 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[71-302] | His_kinase[403-481] | HATPase_c[499-604]
- Domain count: 3
- Matched identifier: HKOC_0935881
- Positioned domains: dCache_1 71-302 ; His_kinase 403-481 ; HATPase_c 499-604
Cluster members and taxonomy
Representative gene: GCF_001405315#AQ985_RS09940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key