1 HisKA#1
35-89 aa · 55 aa · 22.1% of protein
Raw token
HisKA:35:0.0000084:89:55:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS01130
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405315
ClassHKTypeClassicLength249 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405315#AQ985_RS01130Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 249 aa (66.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
139-249 aa · 111 aa · 44.6% of protein
Raw token
HATPase_c:139:8.12e-28:249:114:109- Raw architecture: HisKA:35:0.0000084:89:55:64#HATPase_c:139:8.12e-28:249:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405315::NZ_CYZO01000002.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span97039-97788Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_00229RefSeq proteinWP_009242951.1
Context group ID
GCF_001405315::NZ_CYZO01000002.1::G00006Context members
AQ985_RS01130
Partner locus tags
AQ985_RS01130
Partner old locus tags
ERS852456_00229
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242951.1Primary protein accession used for annex mappings.
UniProt accessionR5QH59Primary UniProt accession resolved in the annex database.
UniProt IDR5QH59_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS01130Primary locus identifier stored in the genes table.
Old locus tagERS852456_00229Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000002.1Sequence record reported by the local genomic context database.
Genomic interval97 039-97 788 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span97 039-97 788 ntGCF_001405315::NZ_CYZO01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span97 039-97 788 nt750 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
97 039 nt97 788 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ985_RS01130GCF_001405315#AQ985_RS01130
HKClassicCurrent focus
97 039-97 788 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000432115#Q6412_RS08000Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2919429
Simplified PFAM architecture for HKOC_2919429
PFAM domain coverage: 110 / 249 aa (44.2%)
1 aa249 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[139-248]
- Domain count: 1
- Matched identifier: HKOC_2919429
- Positioned domains: HATPase_c 139-248
Cluster members and taxonomy
Representative gene: GCF_000432115#Q6412_RS08000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key