1 HAMP#1
156-239 aa · 84 aa · 17.9% of protein
Raw token
HAMP:156:0.000000000445:239:84:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS01080
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405315
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405315#AQ985_RS01080Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 468 aa (54.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-309 aa · 64 aa · 13.7% of protein
Raw token
HisKA:246:0.0000000000000751:309:64:643 HATPase_c#3
357-464 aa · 108 aa · 23.1% of protein
Raw token
HATPase_c:357:8.87e-30:464:108:109- Raw architecture: HAMP:156:0.000000000445:239:84:69#HisKA:246:0.0000000000000751:309:64:64#HATPase_c:357:8.87e-30:464:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405315::NZ_CYZO01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span82671-84748Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_00219RefSeq proteinWP_004848183.1
Context group ID
GCF_001405315::NZ_CYZO01000002.1::G00005Context members
AQ985_RS01080AQ985_RS01085
Partner locus tags
AQ985_RS01080AQ985_RS01085
Partner old locus tags
ERS852456_00219ERS852456_00220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004848183.1Primary protein accession used for annex mappings.
UniProt accessionA5KPN6Primary UniProt accession resolved in the annex database.
UniProt IDA5KPN6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS01080Primary locus identifier stored in the genes table.
Old locus tagERS852456_00219Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000002.1Sequence record reported by the local genomic context database.
Genomic interval82 671-84 077 nt1 407 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span82 671-84 748 ntGCF_001405315::NZ_CYZO01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000002.1All displayed genes belong to this local TCS context.
Neighborhood span82 671-84 748 nt2 078 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
82 671 nt84 748 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ985_RS01080GCF_001405315#AQ985_RS01080
HKClassicCurrent focus
82 671-84 077 nt · Reverse (-)
AQ985_RS01085GCF_001405315#AQ985_RS01085
RROmpR
84 074-84 748 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_027688395#PGZ89_RS06190Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1545972
Simplified PFAM architecture for HKOC_1545972
PFAM domain coverage: 240 / 489 aa (49.1%)
1 aa489 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[195-260] | HisKA[266-330] | HATPase_c[378-486]
- Domain count: 3
- Matched identifier: HKOC_1545972
- Positioned domains: HAMP 195-260 ; HisKA 266-330 ; HATPase_c 378-486
Cluster members and taxonomy
Representative gene: GCF_027688395#PGZ89_RS06190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key