1 Response_reg#1
3-122 aa · 120 aa · 23.3% of protein
Raw token
Response_reg:3:4.43e-23:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS00480
Response regulator, unclassified
[Ruminococcus] torques · GCF_001405315
ClassRRTypeunclassifiedLength516 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405315#AQ985_RS00480Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length516 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage199 / 516 aa (38.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa516 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
421-462 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:421:0.00000142:462:42:423 HTH_AraC#3
476-512 aa · 37 aa · 7.2% of protein
Raw token
HTH_AraC:476:0.000000274:512:37:42- Raw architecture: Response_reg:3:4.43e-23:122:120:111#HTH_AraC:421:0.00000142:462:42:42#HTH_AraC:476:0.000000274:512:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405315::NZ_CYZO01000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span109399-110949Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_00096RefSeq proteinWP_004847336.1
Context group ID
GCF_001405315::NZ_CYZO01000001.1::G00002Context members
AQ985_RS00480
Partner locus tags
AQ985_RS00480
Partner old locus tags
ERS852456_00096
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004847336.1Primary protein accession used for annex mappings.
UniProt accessionA5KPH1Primary UniProt accession resolved in the annex database.
UniProt IDA5KPH1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS00480Primary locus identifier stored in the genes table.
Old locus tagERS852456_00096Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000001.1Sequence record reported by the local genomic context database.
Genomic interval109 399-110 949 nt1 551 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span109 399-110 949 ntGCF_001405315::NZ_CYZO01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span109 399-110 949 nt1 551 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
109 399 nt110 949 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ985_RS00480GCF_001405315#AQ985_RS00480
RRunclassifiedCurrent focus
109 399-110 949 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS09125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0134107
Simplified PFAM architecture for RROC_0134107
PFAM domain coverage: 198 / 516 aa (38.4%)
1 aa516 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-121] | HTH_18[434-512]
- Domain count: 2
- Matched identifier: RROC_0134107
- Positioned domains: Response_reg 3-121 ; Response_reg 3-121 ; HTH_18 434-512 ; HTH_18 434-512
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS09125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key