1 HisKA#1
208-272 aa · 65 aa · 15.0% of protein
Raw token
HisKA:208:3.58e-16:272:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS00175
Histidine kinase, Classic
[Ruminococcus] torques · GCF_001405315
ClassHKTypeClassicLength432 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405315#AQ985_RS00175Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length432 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 432 aa (37.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa432 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
319-414 aa · 96 aa · 22.2% of protein
Raw token
HATPase_c:319:0.0000000000000946:414:97:109- Raw architecture: HisKA:208:3.58e-16:272:65:64#HATPase_c:319:0.0000000000000946:414:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405315::NZ_CYZO01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39472-41464Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_00035RefSeq proteinWP_009242408.1
Context group ID
GCF_001405315::NZ_CYZO01000001.1::G00001Context members
AQ985_RS00175AQ985_RS00180
Partner locus tags
AQ985_RS00175AQ985_RS00180
Partner old locus tags
ERS852456_00035ERS852456_00036
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009242408.1Primary protein accession used for annex mappings.
UniProt accessionR5QD43Primary UniProt accession resolved in the annex database.
UniProt IDR5QD43_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS00175Primary locus identifier stored in the genes table.
Old locus tagERS852456_00035Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000001.1Sequence record reported by the local genomic context database.
Genomic interval39 472-40 770 nt1 299 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span39 472-41 464 ntGCF_001405315::NZ_CYZO01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000001.1All displayed genes belong to this local TCS context.
Neighborhood span39 472-41 464 nt1 993 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 472 nt41 464 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ985_RS00175GCF_001405315#AQ985_RS00175
HKClassicCurrent focus
39 472-40 770 nt · Reverse (-)
AQ985_RS00180GCF_001405315#AQ985_RS00180
RROmpR
40 745-41 464 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153925#RUMTOR_RS10475Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2151570
Simplified PFAM architecture for HKOC_2151570
PFAM domain coverage: 159 / 432 aa (36.8%)
1 aa432 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[209-272] | HATPase_c[320-414]
- Domain count: 2
- Matched identifier: HKOC_2151570
- Positioned domains: HisKA 209-272 ; HATPase_c 320-414
Cluster members and taxonomy
Representative gene: GCF_000153925#RUMTOR_RS10475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key