1 Response_reg#1
6-117 aa · 112 aa · 20.7% of protein
Raw token
Response_reg:6:3.68e-28:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS09935
Response regulator, unclassified
[Ruminococcus] torques · GCF_001405315
ClassRRTypeunclassifiedLength541 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001405315#AQ985_RS09935Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length541 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage175 / 541 aa (32.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa541 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
446-479 aa · 34 aa · 6.3% of protein
Raw token
HTH_AraC:446:0.00000000776:479:34:423 HTH_AraC#3
500-528 aa · 29 aa · 5.4% of protein
Raw token
HTH_AraC:500:0.000000185:528:29:42- Raw architecture: Response_reg:6:3.68e-28:117:112:111#HTH_AraC:446:0.00000000776:479:34:42#HTH_AraC:500:0.000000185:528:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001405315::NZ_CYZO01000027.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26726-30269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_02023RefSeq proteinWP_055159183.1
Context group ID
GCF_001405315::NZ_CYZO01000027.1::G00020Context members
AQ985_RS09935AQ985_RS09940
Partner locus tags
AQ985_RS09935AQ985_RS09940
Partner old locus tags
ERS852456_02023ERS852456_02024
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055159183.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DMT6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DMT6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS09935Primary locus identifier stored in the genes table.
Old locus tagERS852456_02023Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000027.1Sequence record reported by the local genomic context database.
Genomic interval26 726-28 351 nt1 626 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 726-30 269 ntGCF_001405315::NZ_CYZO01000027.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000027.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000027.1All displayed genes belong to this local TCS context.
Neighborhood span26 726-30 269 nt3 544 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 726 nt30 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ985_RS09935GCF_001405315#AQ985_RS09935
RRunclassifiedCurrent focus
26 726-28 351 nt · Forward (+)
AQ985_RS09940GCF_001405315#AQ985_RS09940
HKClassic
28 365-30 269 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405315#AQ985_RS09935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0087707
Simplified PFAM architecture for RROC_0087707
PFAM domain coverage: 323 / 541 aa (59.7%)
1 aa541 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-117] | GGDEF_2[160-291] | HTH_18[451-529]
- Domain count: 3
- Matched identifier: RROC_0087707
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GGDEF_2 160-291 ; GGDEF_2 160-291 ; HTH_18 451-529 ; HTH_18 451-529
Cluster members and taxonomy
Representative gene: GCF_001405315#AQ985_RS09935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key