1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:0.00000000000000189:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ985_RS05560
Response regulator LytTR family
[Ruminococcus] torques · GCF_001405315
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001405315#AQ985_RS05560Stable P2CS identifier used across views.
GenomeGCF_001405315Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 237 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.4% of protein
Raw token
LytTR:139:2.6e-19:229:97:98- Raw architecture: Response_reg:6:0.00000000000000189:115:112:111#LytTR:139:2.6e-19:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001405315::NZ_CYZO01000012.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11264-11977Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852456_01129RefSeq proteinWP_015513340.1
Context group ID
GCF_001405315::NZ_CYZO01000012.1::G00013Context members
AQ985_RS05560
Partner locus tags
AQ985_RS05560
Partner old locus tags
ERS852456_01129
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015513340.1Primary protein accession used for annex mappings.
UniProt accessionA0A395XBI4Primary UniProt accession resolved in the annex database.
UniProt IDA0A395XBI4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ985_RS05560Primary locus identifier stored in the genes table.
Old locus tagERS852456_01129Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZO01000012.1Sequence record reported by the local genomic context database.
Genomic interval11 264-11 977 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 264-11 977 ntGCF_001405315::NZ_CYZO01000012.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001405315::NZ_CYZO01000012.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZO01000012.1All displayed genes belong to this local TCS context.
Neighborhood span11 264-11 977 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 264 nt11 977 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ985_RS05560GCF_001405315#AQ985_RS05560
RRLytTRCurrent focus
11 264-11 977 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210555#CC1_RS04260Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961891
Simplified PFAM architecture for RROC_0961891
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-118] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0961891
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_000210555#CC1_RS04260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_001405315
Assembly13470_2#60 · Scaffoldhaploid
Genome composition3 004 151 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 46 · HK 21 · RR 24CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key