1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:9.54e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS12740
Response regulator OmpR family
Coprococcus comes · GCF_001404595
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS12740Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:8.71e-31:227:77:77- Raw architecture: Response_reg:4:9.54e-37:113:111:111#Trans_reg_C:151:8.71e-31:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000018.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44266-46105Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_02600RefSeq proteinWP_008370100.1
Context group ID
GCF_001404595::NZ_CYYN01000018.1::G00029Context members
AQ998_RS12735AQ998_RS12740
Partner locus tags
AQ998_RS12735AQ998_RS12740
Partner old locus tags
ERS852389_02599ERS852389_02600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008370100.1Primary protein accession used for annex mappings.
UniProt accessionC0B9Y1Primary UniProt accession resolved in the annex database.
UniProt IDC0B9Y1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS12740Primary locus identifier stored in the genes table.
Old locus tagERS852389_02600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000018.1Sequence record reported by the local genomic context database.
Genomic interval45 416-46 105 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 266-46 105 ntGCF_001404595::NZ_CYYN01000018.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000018.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000018.1All displayed genes belong to this local TCS context.
Neighborhood span44 266-46 105 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 266 nt46 105 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS12735GCF_001404595#AQ998_RS12735
HKClassic
44 266-45 423 nt · Forward (+)
AQ998_RS12740GCF_001404595#AQ998_RS12740
RROmpRCurrent focus
45 416-46 105 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS12740The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1253439
Simplified PFAM architecture for RROC_1253439
PFAM domain coverage: 183 / 229 aa (79.9%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[155-227]
- Domain count: 2
- Matched identifier: RROC_1253439
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 155-227 ; Trans_reg_C 155-227
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS12740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key