1 HAMP#1
73-141 aa · 69 aa · 17.9% of protein
Raw token
HAMP:73:0.00000000000000684:141:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS12735
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength385 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS12735Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length385 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 385 aa (64.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa385 aa
Domain-by-domain annotation3 items
2 HisKA#2
155-219 aa · 65 aa · 16.9% of protein
Raw token
HisKA:155:7.04e-16:219:65:643 HATPase_c#3
266-379 aa · 114 aa · 29.6% of protein
Raw token
HATPase_c:266:8.22e-32:379:114:109- Raw architecture: HAMP:73:0.00000000000000684:141:69:69#HisKA:155:7.04e-16:219:65:64#HATPase_c:266:8.22e-32:379:114:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000018.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44266-46105Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_02599RefSeq proteinWP_055249057.1
Context group ID
GCF_001404595::NZ_CYYN01000018.1::G00029Context members
AQ998_RS12735AQ998_RS12740
Partner locus tags
AQ998_RS12735AQ998_RS12740
Partner old locus tags
ERS852389_02599ERS852389_02600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055249057.1Primary protein accession used for annex mappings.
UniProt accessionA0A174DLD0Primary UniProt accession resolved in the annex database.
UniProt IDA0A174DLD0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS12735Primary locus identifier stored in the genes table.
Old locus tagERS852389_02599Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000018.1Sequence record reported by the local genomic context database.
Genomic interval44 266-45 423 nt1 158 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 266-46 105 ntGCF_001404595::NZ_CYYN01000018.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000018.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000018.1All displayed genes belong to this local TCS context.
Neighborhood span44 266-46 105 nt1 840 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 266 nt46 105 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS12735GCF_001404595#AQ998_RS12735
HKClassicCurrent focus
44 266-45 423 nt · Forward (+)
AQ998_RS12740GCF_001404595#AQ998_RS12740
RROmpR
45 416-46 105 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS12735The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2565677
Simplified PFAM architecture for HKOC_2565677
PFAM domain coverage: 229 / 385 aa (59.5%)
1 aa385 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[89-141] | HisKA[154-218] | HATPase_c[267-377]
- Domain count: 3
- Matched identifier: HKOC_2565677
- Positioned domains: HAMP 89-141 ; HisKA 154-218 ; HATPase_c 267-377
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS12735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key