1 HAMP#1
201-268 aa · 68 aa · 13.7% of protein
Raw token
HAMP:201:0.0000000000000792:268:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS12135
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS12135Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 495 aa (50.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 His_kinase#2
286-364 aa · 79 aa · 16.0% of protein
Raw token
His_kinase:286:3.23e-33:364:79:803 HATPase_c#3
384-486 aa · 103 aa · 20.8% of protein
Raw token
HATPase_c:384:0.00000000000331:486:104:109- Raw architecture: HAMP:201:0.0000000000000792:268:68:69#His_kinase:286:3.23e-33:364:79:80#HATPase_c:384:0.00000000000331:486:104:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000016.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88162-91269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_02468RefSeq proteinWP_070101619.1
Context group ID
GCF_001404595::NZ_CYYN01000016.1::G00027Context members
AQ998_RS12130AQ998_RS12135
Partner locus tags
AQ998_RS12130AQ998_RS12135
Partner old locus tags
ERS852389_02467ERS852389_02468
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_070101619.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QLL4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QLL4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS12135Primary locus identifier stored in the genes table.
Old locus tagERS852389_02468Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000016.1Sequence record reported by the local genomic context database.
Genomic interval89 782-91 269 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 162-91 269 ntGCF_001404595::NZ_CYYN01000016.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000016.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000016.1All displayed genes belong to this local TCS context.
Neighborhood span88 162-91 269 nt3 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 162 nt91 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS12130GCF_001404595#AQ998_RS12130
RRunclassified
88 162-89 778 nt · Forward (+)
AQ998_RS12135GCF_001404595#AQ998_RS12135
HKClassicCurrent focus
89 782-91 269 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS12135The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1504798
Simplified PFAM architecture for HKOC_1504798
PFAM domain coverage: 230 / 495 aa (46.5%)
1 aa495 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[219-268] | His_kinase[286-362] | HATPase_c[384-486]
- Domain count: 3
- Matched identifier: HKOC_1504798
- Positioned domains: HAMP 219-268 ; His_kinase 286-362 ; HATPase_c 384-486
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS12135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key