1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:7.98e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS12130
Response regulator, unclassified
Coprococcus comes · GCF_001404595
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS12130Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 538 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-484 aa · 41 aa · 7.6% of protein
Raw token
HTH_AraC:444:0.000000146:484:41:423 HTH_AraC#3
496-533 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:496:0.00000142:533:38:42- Raw architecture: Response_reg:4:7.98e-31:117:114:111#HTH_AraC:444:0.000000146:484:41:42#HTH_AraC:496:0.00000142:533:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000016.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88162-91269Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_02467RefSeq proteinWP_055248948.1
Context group ID
GCF_001404595::NZ_CYYN01000016.1::G00027Context members
AQ998_RS12130AQ998_RS12135
Partner locus tags
AQ998_RS12130AQ998_RS12135
Partner old locus tags
ERS852389_02467ERS852389_02468
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248948.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CZ88Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CZ88_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS12130Primary locus identifier stored in the genes table.
Old locus tagERS852389_02467Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000016.1Sequence record reported by the local genomic context database.
Genomic interval88 162-89 778 nt1 617 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 162-91 269 ntGCF_001404595::NZ_CYYN01000016.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000016.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000016.1All displayed genes belong to this local TCS context.
Neighborhood span88 162-91 269 nt3 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 162 nt91 269 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS12130GCF_001404595#AQ998_RS12130
RRunclassifiedCurrent focus
88 162-89 778 nt · Forward (+)
AQ998_RS12135GCF_001404595#AQ998_RS12135
HKClassic
89 782-91 269 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS12130The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0094250
Simplified PFAM architecture for RROC_0094250
PFAM domain coverage: 315 / 538 aa (58.6%)
1 aa538 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-117] | GGDEF_2[166-287] | HTH_18[457-535]
- Domain count: 3
- Matched identifier: RROC_0094250
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; GGDEF_2 166-287 ; GGDEF_2 166-287 ; HTH_18 457-535 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS12130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key