1 SBP_bac_3#1
43-246 aa · 204 aa · 21.4% of protein
Raw token
SBP_bac_3:43:9.73e-27:246:216:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS10370
Histidine kinase, Hybrid
Coprococcus comes · GCF_001404595
ClassHKTypeHybridLength952 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_001404595#AQ998_RS10370Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length952 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage707 / 952 aa (74.3%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa952 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.2% of protein
Raw token
SBP_bac_3:281:7.94e-19:482:219:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:8.04e-18:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:691:1.31e-26:808:118:1095 Response_reg#5
829-945 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:829:7.93e-29:945:117:111- Raw architecture: SBP_bac_3:43:9.73e-27:246:216:224#SBP_bac_3:281:7.94e-19:482:219:224#HisKA:577:8.04e-18:642:66:64#HATPase_c:691:1.31e-26:808:118:109#Response_reg:829:7.93e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_001404595::NZ_CYYN01000013.1::G00025
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span64592-71334Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_02109RefSeq proteinWP_055248587.1
Context group ID
GCF_001404595::NZ_CYYN01000013.1::G00025Context members
AQ998_RS10365AQ998_RS10370AQ998_RS10375
Partner locus tags
AQ998_RS10365AQ998_RS10370AQ998_RS10375
Partner old locus tags
ERS852389_02108ERS852389_02109ERS852389_02110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248587.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37VHS4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37VHS4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS10370Primary locus identifier stored in the genes table.
Old locus tagERS852389_02109Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000013.1Sequence record reported by the local genomic context database.
Genomic interval66 760-69 618 nt2 859 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span64 592-71 334 ntGCF_001404595::NZ_CYYN01000013.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000013.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000013.1All displayed genes belong to this local TCS context.
Neighborhood span64 592-71 334 nt6 743 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
64 592 nt71 334 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
AQ998_RS10365GCF_001404595#AQ998_RS10365
HKHybrid
64 592-66 664 nt · Reverse (-)
AQ998_RS10370GCF_001404595#AQ998_RS10370
HKHybridCurrent focus
66 760-69 618 nt · Reverse (-)
AQ998_RS10375GCF_001404595#AQ998_RS10375
RRRpfG
69 844-71 334 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS10370The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0324527
Simplified PFAM architecture for HKOC_0324527
PFAM domain coverage: 497 / 952 aa (52.2%)
1 aa952 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[52-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0324527
- Positioned domains: SBP_bac_3 52-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS10370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key