1 Response_reg#1
4-111 aa · 108 aa · 45.4% of protein
Raw token
Response_reg:4:0.00000000000107:111:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS09845
Response regulator LytTR family
Coprococcus comes · GCF_001404595
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404595#AQ998_RS09845Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage191 / 238 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-223 aa · 83 aa · 34.9% of protein
Raw token
LytTR:141:0.00000000000000485:223:88:98- Raw architecture: Response_reg:4:0.00000000000107:111:110:111#LytTR:141:0.00000000000000485:223:88:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404595::NZ_CYYN01000012.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span79570-80286Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_02005RefSeq proteinWP_055248444.1
Context group ID
GCF_001404595::NZ_CYYN01000012.1::G00022Context members
AQ998_RS09845
Partner locus tags
AQ998_RS09845
Partner old locus tags
ERS852389_02005
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248444.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QCN1Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QCN1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS09845Primary locus identifier stored in the genes table.
Old locus tagERS852389_02005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000012.1Sequence record reported by the local genomic context database.
Genomic interval79 570-80 286 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span79 570-80 286 ntGCF_001404595::NZ_CYYN01000012.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000012.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000012.1All displayed genes belong to this local TCS context.
Neighborhood span79 570-80 286 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 570 nt80 286 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ998_RS09845GCF_001404595#AQ998_RS09845
RRLytTRCurrent focus
79 570-80 286 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS09845The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0936209
Simplified PFAM architecture for RROC_0936209
PFAM domain coverage: 199 / 238 aa (83.6%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[140-228]
- Domain count: 2
- Matched identifier: RROC_0936209
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 140-228 ; LytTR 140-228
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS09845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key