1 HisKA#1
36-87 aa · 52 aa · 21.4% of protein
Raw token
HisKA:36:0.0000153:87:52:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS08410
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404595#AQ998_RS08410Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 243 aa (65.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
138-243 aa · 106 aa · 43.6% of protein
Raw token
HATPase_c:138:1.95e-30:243:109:109- Raw architecture: HisKA:36:0.0000153:87:52:64#HATPase_c:138:1.95e-30:243:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404595::NZ_CYYN01000010.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span37379-38110Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_01719RefSeq proteinWP_055248092.1
Context group ID
GCF_001404595::NZ_CYYN01000010.1::G00019Context members
AQ998_RS08410
Partner locus tags
AQ998_RS08410
Partner old locus tags
ERS852389_01719
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055248092.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QIF4Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QIF4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS08410Primary locus identifier stored in the genes table.
Old locus tagERS852389_01719Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000010.1Sequence record reported by the local genomic context database.
Genomic interval37 379-38 110 nt732 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 379-38 110 ntGCF_001404595::NZ_CYYN01000010.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000010.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000010.1All displayed genes belong to this local TCS context.
Neighborhood span37 379-38 110 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 379 nt38 110 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ998_RS08410GCF_001404595#AQ998_RS08410
HKClassicCurrent focus
37 379-38 110 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS08410The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2921570
Simplified PFAM architecture for HKOC_2921570
PFAM domain coverage: 104 / 243 aa (42.8%)
1 aa243 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[139-242]
- Domain count: 1
- Matched identifier: HKOC_2921570
- Positioned domains: HATPase_c 139-242
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS08410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key