1 Response_reg#1
5-115 aa · 111 aa · 38.9% of protein
Raw token
Response_reg:5:3.99e-23:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS06720
Response regulator, unclassified
Coprococcus comes · GCF_001404595
ClassRRTypeunclassifiedLength285 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404595#AQ998_RS06720Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length285 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage231 / 285 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa285 aa
Domain-by-domain annotation2 items
2 YcbB#2
158-277 aa · 120 aa · 42.1% of protein
Raw token
YcbB:158:8.62e-44:277:131:131- Raw architecture: Response_reg:5:3.99e-23:115:111:111#YcbB:158:8.62e-44:277:131:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404595::NZ_CYYN01000007.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span128713-129570Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_01375RefSeq proteinWP_055247710.1
Context group ID
GCF_001404595::NZ_CYYN01000007.1::G00012Context members
AQ998_RS06720
Partner locus tags
AQ998_RS06720
Partner old locus tags
ERS852389_01375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247710.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QCE2Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QCE2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS06720Primary locus identifier stored in the genes table.
Old locus tagERS852389_01375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000007.1Sequence record reported by the local genomic context database.
Genomic interval128 713-129 570 nt858 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span128 713-129 570 ntGCF_001404595::NZ_CYYN01000007.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000007.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000007.1All displayed genes belong to this local TCS context.
Neighborhood span128 713-129 570 nt858 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
128 713 nt129 570 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
AQ998_RS06720GCF_001404595#AQ998_RS06720
RRunclassifiedCurrent focus
128 713-129 570 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS06720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0591338
Simplified PFAM architecture for RROC_0591338
PFAM domain coverage: 227 / 285 aa (79.6%)
1 aa285 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-112] | YcbB[159-277]
- Domain count: 2
- Matched identifier: RROC_0591338
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; YcbB 159-277 ; YcbB 159-277
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS06720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key