1 Response_reg#1
4-119 aa · 116 aa · 21.9% of protein
Raw token
Response_reg:4:3.35e-29:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS05355
Response regulator, unclassified
Coprococcus comes · GCF_001404595
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS05355Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage147 / 530 aa (27.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
494-524 aa · 31 aa · 5.8% of protein
Raw token
HTH_AraC:494:0.0000000644:524:31:42- Raw architecture: Response_reg:4:3.35e-29:119:117:111#HTH_AraC:494:0.0000000644:524:31:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000006.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span25617-29008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_01096RefSeq proteinWP_055247458.1
Context group ID
GCF_001404595::NZ_CYYN01000006.1::G00008Context members
AQ998_RS05355AQ998_RS05360
Partner locus tags
AQ998_RS05355AQ998_RS05360
Partner old locus tags
ERS852389_01096ERS852389_01097
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247458.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37Q8X7Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37Q8X7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS05355Primary locus identifier stored in the genes table.
Old locus tagERS852389_01096Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000006.1Sequence record reported by the local genomic context database.
Genomic interval25 617-27 209 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 617-29 008 ntGCF_001404595::NZ_CYYN01000006.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000006.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000006.1All displayed genes belong to this local TCS context.
Neighborhood span25 617-29 008 nt3 392 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 617 nt29 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS05355GCF_001404595#AQ998_RS05355
RRunclassifiedCurrent focus
25 617-27 209 nt · Forward (+)
AQ998_RS05360GCF_001404595#AQ998_RS05360
HKClassic
27 287-29 008 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS05355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0111581
Simplified PFAM architecture for RROC_0111581
PFAM domain coverage: 181 / 530 aa (34.2%)
1 aa530 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-106] | HTH_18[447-524]
- Domain count: 2
- Matched identifier: RROC_0111581
- Positioned domains: Response_reg 4-106 ; Response_reg 4-106 ; HTH_18 447-524 ; HTH_18 447-524
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS05355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key