1 HisKA#1
466-531 aa · 66 aa · 9.5% of protein
Raw token
HisKA:466:1.15e-16:531:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS04425
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength694 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS04425Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length694 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 694 aa (22.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa694 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
584-672 aa · 89 aa · 12.8% of protein
Raw token
HATPase_c:584:0.0000000000000603:672:93:109- Raw architecture: HisKA:466:1.15e-16:531:66:64#HATPase_c:584:0.0000000000000603:672:93:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000005.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23149-25912Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00905RefSeq proteinWP_055247187.1
Context group ID
GCF_001404595::NZ_CYYN01000005.1::G00007Context members
AQ998_RS04420AQ998_RS04425
Partner locus tags
AQ998_RS04420AQ998_RS04425
Partner old locus tags
ERS852389_00904ERS852389_00905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055247187.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37QHJ8Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37QHJ8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS04425Primary locus identifier stored in the genes table.
Old locus tagERS852389_00905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000005.1Sequence record reported by the local genomic context database.
Genomic interval23 828-25 912 nt2 085 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 149-25 912 ntGCF_001404595::NZ_CYYN01000005.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000005.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000005.1All displayed genes belong to this local TCS context.
Neighborhood span23 149-25 912 nt2 764 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 149 nt25 912 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS04420GCF_001404595#AQ998_RS04420
RROmpR
23 149-23 856 nt · Forward (+)
AQ998_RS04425GCF_001404595#AQ998_RS04425
HKClassicCurrent focus
23 828-25 912 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS04425The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0782622
Simplified PFAM architecture for HKOC_0782622
PFAM domain coverage: 160 / 694 aa (23.1%)
1 aa694 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[466-530] | HATPase_c[579-673]
- Domain count: 2
- Matched identifier: HKOC_0782622
- Positioned domains: HisKA 466-530 ; HATPase_c 579-673
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS04425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key