1 HAMP#1
193-254 aa · 62 aa · 12.6% of protein
Raw token
HAMP:193:0.00000219:254:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
AQ998_RS01315
Histidine kinase, Classic
Coprococcus comes · GCF_001404595
ClassHKTypeClassicLength493 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404595#AQ998_RS01315Stable P2CS identifier used across views.
GenomeGCF_001404595Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length493 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 493 aa (48.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa493 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-329 aa · 66 aa · 13.4% of protein
Raw token
HisKA:264:0.00000000000000445:329:66:643 HATPase_c#3
377-487 aa · 111 aa · 22.5% of protein
Raw token
HATPase_c:377:2.45e-31:487:111:109- Raw architecture: HAMP:193:0.00000219:254:63:69#HisKA:264:0.00000000000000445:329:66:64#HATPase_c:377:2.45e-31:487:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404595::NZ_CYYN01000002.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42985-45100Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852389_00271RefSeq proteinWP_416387070.1
Context group ID
GCF_001404595::NZ_CYYN01000002.1::G00002Context members
AQ998_RS01315AQ998_RS01320
Partner locus tags
AQ998_RS01315AQ998_RS01320
Partner old locus tags
ERS852389_00271ERS852389_00272
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_416387070.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAQ998_RS01315Primary locus identifier stored in the genes table.
Old locus tagERS852389_00271Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYYN01000002.1Sequence record reported by the local genomic context database.
Genomic interval42 985-44 322 nt1 338 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 985-45 100 ntGCF_001404595::NZ_CYYN01000002.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404595::NZ_CYYN01000002.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYYN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span42 985-45 100 nt2 116 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 985 nt45 100 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
AQ998_RS01315GCF_001404595#AQ998_RS01315
HKClassicCurrent focus
42 985-44 322 nt · Reverse (-)
AQ998_RS01320GCF_001404595#AQ998_RS01320
RROmpR
44 411-45 100 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS01315The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1515368
Simplified PFAM architecture for HKOC_1515368
PFAM domain coverage: 176 / 493 aa (35.7%)
1 aa493 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[265-329] | HATPase_c[377-487]
- Domain count: 2
- Matched identifier: HKOC_1515368
- Positioned domains: HisKA 265-329 ; HATPase_c 377-487
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS01315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_001404595
Assembly13414_6#16 · Scaffoldhaploid
Genome composition3 221 152 bp · 42,0% GCCoprococcus comes
Signal transduction countsGenes 70 · HK 34 · RR 35CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key