1 HisKA#1
344-410 aa · 67 aa · 9.3% of protein
Raw token
HisKA:344:0.0000000000000289:410:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS09640
Histidine kinase, Hybrid
Blautia obeum · GCF_001404535
ClassHKTypeHybridLength722 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404535#ARA50_RS09640Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length722 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 722 aa (42.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa722 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
457-574 aa · 118 aa · 16.3% of protein
Raw token
HATPase_c:457:2.92e-26:574:118:1093 Response_reg#3
597-714 aa · 118 aa · 16.3% of protein
Raw token
Response_reg:597:2.97e-29:714:118:111- Raw architecture: HisKA:344:0.0000000000000289:410:67:64#HATPase_c:457:2.92e-26:574:118:109#Response_reg:597:2.97e-29:714:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404535::NZ_CYZD01000008.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span102999-105167Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01950RefSeq proteinWP_055066169.1
Context group ID
GCF_001404535::NZ_CYZD01000008.1::G00021Context members
ARA50_RS09640
Partner locus tags
ARA50_RS09640
Partner old locus tags
ERS852394_01950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066169.1Primary protein accession used for annex mappings.
UniProt accessionA0A174E3I9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174E3I9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS09640Primary locus identifier stored in the genes table.
Old locus tagERS852394_01950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000008.1Sequence record reported by the local genomic context database.
Genomic interval102 999-105 167 nt2 169 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 999-105 167 ntGCF_001404535::NZ_CYZD01000008.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000008.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000008.1All displayed genes belong to this local TCS context.
Neighborhood span102 999-105 167 nt2 169 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 999 nt105 167 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA50_RS09640GCF_001404535#ARA50_RS09640
HKHybridCurrent focus
102 999-105 167 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS09640The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0728890
Simplified PFAM architecture for HKOC_0728890
PFAM domain coverage: 300 / 722 aa (41.6%)
1 aa722 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[344-410] | HATPase_c[458-573] | Response_reg[597-713]
- Domain count: 3
- Matched identifier: HKOC_0728890
- Positioned domains: HisKA 344-410 ; HATPase_c 458-573 ; Response_reg 597-713
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS09640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key