1 HAMP#1
193-261 aa · 69 aa · 13.5% of protein
Raw token
HAMP:193:5.61e-16:261:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS01470
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength510 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS01470Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length510 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 510 aa (48.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa510 aa
Domain-by-domain annotation3 items
2 HisKA#2
286-353 aa · 68 aa · 13.3% of protein
Raw token
HisKA:286:0.00000000000000119:353:68:643 HATPase_c#3
398-509 aa · 112 aa · 22.0% of protein
Raw token
HATPase_c:398:2.83e-19:509:113:109- Raw architecture: HAMP:193:5.61e-16:261:69:69#HisKA:286:0.00000000000000119:353:68:64#HATPase_c:398:2.83e-19:509:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span303012-305224Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_00301RefSeq proteinWP_005422142.1
Context group ID
GCF_001404535::NZ_CYZD01000001.1::G00002Context members
ARA50_RS01470ARA50_RS01475
Partner locus tags
ARA50_RS01470ARA50_RS01475
Partner old locus tags
ERS852394_00301ERS852394_00302
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005422142.1Primary protein accession used for annex mappings.
UniProt accessionA5ZUB6Primary UniProt accession resolved in the annex database.
UniProt IDA5ZUB6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS01470Primary locus identifier stored in the genes table.
Old locus tagERS852394_00301Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000001.1Sequence record reported by the local genomic context database.
Genomic interval303 012-304 544 nt1 533 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span303 012-305 224 ntGCF_001404535::NZ_CYZD01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span303 012-305 224 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
303 012 nt305 224 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS01470GCF_001404535#ARA50_RS01470
HKClassicCurrent focus
303 012-304 544 nt · Reverse (-)
ARA50_RS01475GCF_001404535#ARA50_RS01475
RROmpR
304 541-305 224 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000153905#RUMOBE_RS01415Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1428067
Simplified PFAM architecture for HKOC_1428067
PFAM domain coverage: 230 / 510 aa (45.1%)
1 aa510 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[209-260] | HisKA[286-353] | HATPase_c[399-508]
- Domain count: 3
- Matched identifier: HKOC_1428067
- Positioned domains: HAMP 209-260 ; HisKA 286-353 ; HATPase_c 399-508
Cluster members and taxonomy
Representative gene: GCF_000153905#RUMOBE_RS01415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key