1 Response_reg#1
4-116 aa · 113 aa · 21.8% of protein
Raw token
Response_reg:4:3.74e-28:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS04060
Response regulator, unclassified
Blautia obeum · GCF_001404535
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS04060Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage182 / 518 aa (35.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-464 aa · 34 aa · 6.6% of protein
Raw token
HTH_AraC:431:0.00000269:464:34:423 HTH_AraC#3
479-513 aa · 35 aa · 6.8% of protein
Raw token
HTH_AraC:479:0.000000593:513:35:42- Raw architecture: Response_reg:4:3.74e-28:116:113:111#HTH_AraC:431:0.00000269:464:34:42#HTH_AraC:479:0.000000593:513:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70547-73956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_00827RefSeq proteinWP_055065755.1
Context group ID
GCF_001404535::NZ_CYZD01000003.1::G00004Context members
ARA50_RS04060ARA50_RS04065
Partner locus tags
ARA50_RS04060ARA50_RS04065
Partner old locus tags
ERS852394_00827ERS852394_00828
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065755.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZIB2Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZIB2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS04060Primary locus identifier stored in the genes table.
Old locus tagERS852394_00827Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000003.1Sequence record reported by the local genomic context database.
Genomic interval70 547-72 103 nt1 557 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 547-73 956 ntGCF_001404535::NZ_CYZD01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span70 547-73 956 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 547 nt73 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS04060GCF_001404535#ARA50_RS04060
RRunclassifiedCurrent focus
70 547-72 103 nt · Forward (+)
ARA50_RS04065GCF_001404535#ARA50_RS04065
HKClassic
72 100-73 956 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS04060The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0129295
Simplified PFAM architecture for RROC_0129295
PFAM domain coverage: 191 / 518 aa (36.9%)
1 aa518 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[438-515]
- Domain count: 2
- Matched identifier: RROC_0129295
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 438-515 ; HTH_18 438-515
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS04060
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key