1 HAMP#1
317-379 aa · 63 aa · 10.2% of protein
Raw token
HAMP:317:0.00000000322:379:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS04065
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength618 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS04065Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length618 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 618 aa (40.3%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa618 aa
Domain-by-domain annotation3 items
2 His_kinase#2
400-479 aa · 80 aa · 12.9% of protein
Raw token
His_kinase:400:4.97e-29:479:80:803 HATPase_c#3
499-604 aa · 106 aa · 17.2% of protein
Raw token
HATPase_c:499:0.00000000000142:604:109:109- Raw architecture: HAMP:317:0.00000000322:379:63:69#His_kinase:400:4.97e-29:479:80:80#HATPase_c:499:0.00000000000142:604:109:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span70547-73956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_00828RefSeq proteinWP_055065756.1
Context group ID
GCF_001404535::NZ_CYZD01000003.1::G00004Context members
ARA50_RS04060ARA50_RS04065
Partner locus tags
ARA50_RS04060ARA50_RS04065
Partner old locus tags
ERS852394_00827ERS852394_00828
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065756.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZFT4Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZFT4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS04065Primary locus identifier stored in the genes table.
Old locus tagERS852394_00828Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000003.1Sequence record reported by the local genomic context database.
Genomic interval72 100-73 956 nt1 857 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span70 547-73 956 ntGCF_001404535::NZ_CYZD01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000003.1All displayed genes belong to this local TCS context.
Neighborhood span70 547-73 956 nt3 410 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 547 nt73 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS04060GCF_001404535#ARA50_RS04060
RRunclassified
70 547-72 103 nt · Forward (+)
ARA50_RS04065GCF_001404535#ARA50_RS04065
HKClassicCurrent focus
72 100-73 956 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS04065The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0978056
Simplified PFAM architecture for HKOC_0978056
PFAM domain coverage: 184 / 618 aa (29.8%)
1 aa618 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[400-478] | HATPase_c[499-603]
- Domain count: 2
- Matched identifier: HKOC_0978056
- Positioned domains: His_kinase 400-478 ; HATPase_c 499-603
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS04065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key