1 HisKA#1
189-254 aa · 66 aa · 16.1% of protein
Raw token
HisKA:189:0.0000000000152:254:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS07960
Histidine kinase, Classic
Blautia obeum · GCF_001404535
ClassHKTypeClassicLength411 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404535#ARA50_RS07960Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length411 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 411 aa (41.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa411 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
300-403 aa · 104 aa · 25.3% of protein
Raw token
HATPase_c:300:6.8e-26:403:104:109- Raw architecture: HisKA:189:0.0000000000152:254:66:64#HATPase_c:300:6.8e-26:403:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404535::NZ_CYZD01000006.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140091-142019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01606RefSeq proteinWP_055066044.1
Context group ID
GCF_001404535::NZ_CYZD01000006.1::G00016Context members
ARA50_RS07960ARA50_RS07965
Partner locus tags
ARA50_RS07960ARA50_RS07965
Partner old locus tags
ERS852394_01606ERS852394_01607
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055066044.1Primary protein accession used for annex mappings.
UniProt accessionA0A174CSC8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174CSC8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS07960Primary locus identifier stored in the genes table.
Old locus tagERS852394_01606Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000006.1Sequence record reported by the local genomic context database.
Genomic interval140 091-141 326 nt1 236 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 091-142 019 ntGCF_001404535::NZ_CYZD01000006.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000006.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000006.1All displayed genes belong to this local TCS context.
Neighborhood span140 091-142 019 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 091 nt142 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARA50_RS07960GCF_001404535#ARA50_RS07960
HKClassicCurrent focus
140 091-141 326 nt · Reverse (-)
ARA50_RS07965GCF_001404535#ARA50_RS07965
RROmpR
141 336-142 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS07960The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2345972
Simplified PFAM architecture for HKOC_2345972
PFAM domain coverage: 170 / 411 aa (41.4%)
1 aa411 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[190-254] | HATPase_c[300-404]
- Domain count: 2
- Matched identifier: HKOC_2345972
- Positioned domains: HisKA 190-254 ; HATPase_c 300-404
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS07960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key