1 Response_reg#1
6-118 aa · 113 aa · 47.9% of protein
Raw token
Response_reg:6:0.0000000000526:118:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARA50_RS05485
Response regulator LytTR family
Blautia obeum · GCF_001404535
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_001404535#ARA50_RS05485Stable P2CS identifier used across views.
GenomeGCF_001404535Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 236 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-222 aa · 84 aa · 35.6% of protein
Raw token
LytTR:139:4e-16:222:90:98- Raw architecture: Response_reg:6:0.0000000000526:118:116:111#LytTR:139:4e-16:222:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_001404535::NZ_CYZD01000004.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span93756-94466Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852394_01110RefSeq proteinWP_055065877.1
Context group ID
GCF_001404535::NZ_CYZD01000004.1::G00009Context members
ARA50_RS05485
Partner locus tags
ARA50_RS05485
Partner old locus tags
ERS852394_01110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055065877.1Primary protein accession used for annex mappings.
UniProt accessionA0A174AQF9Primary UniProt accession resolved in the annex database.
UniProt IDA0A174AQF9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARA50_RS05485Primary locus identifier stored in the genes table.
Old locus tagERS852394_01110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZD01000004.1Sequence record reported by the local genomic context database.
Genomic interval93 756-94 466 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 756-94 466 ntGCF_001404535::NZ_CYZD01000004.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404535::NZ_CYZD01000004.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZD01000004.1All displayed genes belong to this local TCS context.
Neighborhood span93 756-94 466 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 756 nt94 466 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ARA50_RS05485GCF_001404535#ARA50_RS05485
RRLytTRCurrent focus
93 756-94 466 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404535#ARA50_RS05485The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0991708
Simplified PFAM architecture for RROC_0991708
PFAM domain coverage: 198 / 236 aa (83.9%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-117] | LytTR[142-226]
- Domain count: 2
- Matched identifier: RROC_0991708
- Positioned domains: Response_reg 5-117 ; Response_reg 5-117 ; LytTR 142-226 ; LytTR 142-226
Cluster members and taxonomy
Representative gene: GCF_001404535#ARA50_RS05485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 40 520 · GCF_001404535
Assembly13414_6#21 · Scaffoldhaploid
Genome composition3 357 012 bp · 41,5% GCBlautia obeum
Signal transduction countsGenes 83 · HK 43 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key