1 HAMP#1
315-384 aa · 70 aa · 11.6% of protein
Raw token
HAMP:315:0.00000000000000242:384:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS02220
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength606 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS02220Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length606 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage263 / 606 aa (43.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 His_kinase#2
400-478 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:400:9.63e-30:478:79:803 HATPase_c#3
490-603 aa · 114 aa · 18.8% of protein
Raw token
HATPase_c:490:0.000000000000221:603:116:109- Raw architecture: HAMP:315:0.00000000000000242:384:70:69#His_kinase:400:9.63e-30:478:79:80#HATPase_c:490:0.000000000000221:603:116:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2591-5990Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00446RefSeq proteinWP_055150568.1
Context group ID
GCF_001404335::NZ_CYZU01000003.1::G00005Context members
ARB69_RS02215ARB69_RS02220
Partner locus tags
ARB69_RS02215ARB69_RS02220
Partner old locus tags
ERS852491_00445ERS852491_00446
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055150568.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZME9Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZME9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS02220Primary locus identifier stored in the genes table.
Old locus tagERS852491_00446Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000003.1Sequence record reported by the local genomic context database.
Genomic interval4 170-5 990 nt1 821 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 591-5 990 ntGCF_001404335::NZ_CYZU01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 591-5 990 nt3 400 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 591 nt5 990 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS02215GCF_001404335#ARB69_RS02215
RRunclassified
2 591-4 177 nt · Reverse (-)
ARB69_RS02220GCF_001404335#ARB69_RS02220
HKClassicCurrent focus
4 170-5 990 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS02220The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1023693
Simplified PFAM architecture for HKOC_1023693
PFAM domain coverage: 237 / 606 aa (39.1%)
1 aa606 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[333-383] | His_kinase[400-478] | HATPase_c[495-601]
- Domain count: 3
- Matched identifier: HKOC_1023693
- Positioned domains: HAMP 333-383 ; His_kinase 400-478 ; HATPase_c 495-601
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS02220
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key