1 dCache_1#1
47-283 aa · 237 aa · 38.9% of protein
Raw token
dCache_1:47:0.0000000000000799:283:246:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS00045
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength609 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS00045Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length609 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage501 / 609 aa (82.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HAMP#2
301-369 aa · 69 aa · 11.3% of protein
Raw token
HAMP:301:0.000000000000874:369:69:693 His_kinase#3
391-469 aa · 79 aa · 13.0% of protein
Raw token
His_kinase:391:4.97e-25:469:80:804 HATPase_c#4
485-600 aa · 116 aa · 19.0% of protein
Raw token
HATPase_c:485:0.000000000000318:600:117:109- Raw architecture: dCache_1:47:0.0000000000000799:283:246:195#HAMP:301:0.000000000000874:369:69:69#His_kinase:391:4.97e-25:469:80:80#HATPase_c:485:0.000000000000318:600:117:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11531-14984Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00009RefSeq proteinWP_055149845.1
Context group ID
GCF_001404335::NZ_CYZU01000001.1::G00001Context members
ARB69_RS00040ARB69_RS00045
Partner locus tags
ARB69_RS00040ARB69_RS00045
Partner old locus tags
ERS852491_00008ERS852491_00009
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149845.1Primary protein accession used for annex mappings.
UniProt accessionA0A173Y7Y2Primary UniProt accession resolved in the annex database.
UniProt IDA0A173Y7Y2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS00045Primary locus identifier stored in the genes table.
Old locus tagERS852491_00009Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000001.1Sequence record reported by the local genomic context database.
Genomic interval13 155-14 984 nt1 830 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 531-14 984 ntGCF_001404335::NZ_CYZU01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span11 531-14 984 nt3 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 531 nt14 984 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS00040GCF_001404335#ARB69_RS00040
RRunclassified
11 531-13 162 nt · Reverse (-)
ARB69_RS00045GCF_001404335#ARB69_RS00045
HKClassicCurrent focus
13 155-14 984 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS00045The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1009024
Simplified PFAM architecture for HKOC_1009024
PFAM domain coverage: 484 / 609 aa (79.5%)
1 aa609 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[46-283] | HAMP[318-368] | His_kinase[391-469] | HATPase_c[485-600]
- Domain count: 4
- Matched identifier: HKOC_1009024
- Positioned domains: dCache_1 46-283 ; HAMP 318-368 ; His_kinase 391-469 ; HATPase_c 485-600
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS00045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key