1 HAMP#1
167-237 aa · 71 aa · 15.2% of protein
Raw token
HAMP:167:0.00000000699:237:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS01965
Histidine kinase, Classic
Faecalicatena contorta · GCF_001404335
ClassHKTypeClassicLength466 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS01965Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length466 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 466 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
248-314 aa · 67 aa · 14.4% of protein
Raw token
HisKA:248:0.000000000871:314:67:643 HATPase_c#3
361-466 aa · 106 aa · 22.7% of protein
Raw token
HATPase_c:361:7.81e-22:466:107:109- Raw architecture: HAMP:167:0.00000000699:237:71:69#HisKA:248:0.000000000871:314:67:64#HATPase_c:361:7.81e-22:466:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146533-148628Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00394RefSeq proteinWP_050639709.1
Context group ID
GCF_001404335::NZ_CYZU01000002.1::G00004Context members
ARB69_RS01965ARB69_RS01970
Partner locus tags
ARB69_RS01965ARB69_RS01970
Partner old locus tags
ERS852491_00394ERS852491_00395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_050639709.1Primary protein accession used for annex mappings.
UniProt accessionA0A173ZEP7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173ZEP7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS01965Primary locus identifier stored in the genes table.
Old locus tagERS852491_00394Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000002.1Sequence record reported by the local genomic context database.
Genomic interval146 533-147 933 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span146 533-148 628 ntGCF_001404335::NZ_CYZU01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000002.1All displayed genes belong to this local TCS context.
Neighborhood span146 533-148 628 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 533 nt148 628 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS01965GCF_001404335#ARB69_RS01965
HKClassicCurrent focus
146 533-147 933 nt · Reverse (-)
ARB69_RS01970GCF_001404335#ARB69_RS01970
RROmpR
147 933-148 628 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001244405#BN1938_RS05900Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1762750
Simplified PFAM architecture for HKOC_1762750
PFAM domain coverage: 223 / 466 aa (47.9%)
1 aa466 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[185-237] | HisKA[249-313] | HATPase_c[361-465]
- Domain count: 3
- Matched identifier: HKOC_1762750
- Positioned domains: HAMP 185-237 ; HisKA 249-313 ; HATPase_c 361-465
Cluster members and taxonomy
Representative gene: GCF_001244405#BN1938_RS05900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key