1 Response_reg#1
4-117 aa · 114 aa · 21.0% of protein
Raw token
Response_reg:4:1.18e-26:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ARB69_RS00040
Response regulator, unclassified
Faecalicatena contorta · GCF_001404335
ClassRRTypeunclassifiedLength543 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_001404335#ARB69_RS00040Stable P2CS identifier used across views.
GenomeGCF_001404335Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Faecalicatena
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length543 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 543 aa (35.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HTH_AraC#2
442-483 aa · 42 aa · 7.7% of protein
Raw token
HTH_AraC:442:0.0000000265:483:42:423 HTH_AraC#3
499-534 aa · 36 aa · 6.6% of protein
Raw token
HTH_AraC:499:0.0000021:534:36:42- Raw architecture: Response_reg:4:1.18e-26:117:114:111#HTH_AraC:442:0.0000000265:483:42:42#HTH_AraC:499:0.0000021:534:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_001404335::NZ_CYZU01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11531-14984Genomic interval covered by the local TCS group.
Identifiers
Old locus tagERS852491_00008RefSeq proteinWP_055149839.1
Context group ID
GCF_001404335::NZ_CYZU01000001.1::G00001Context members
ARB69_RS00040ARB69_RS00045
Partner locus tags
ARB69_RS00040ARB69_RS00045
Partner old locus tags
ERS852491_00008ERS852491_00009
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149839.1Primary protein accession used for annex mappings.
UniProt accessionA0A173Y6K8Primary UniProt accession resolved in the annex database.
UniProt IDA0A173Y6K8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagARB69_RS00040Primary locus identifier stored in the genes table.
Old locus tagERS852491_00008Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CYZU01000001.1Sequence record reported by the local genomic context database.
Genomic interval11 531-13 162 nt1 632 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 531-14 984 ntGCF_001404335::NZ_CYZU01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_001404335::NZ_CYZU01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CYZU01000001.1All displayed genes belong to this local TCS context.
Neighborhood span11 531-14 984 nt3 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 531 nt14 984 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ARB69_RS00040GCF_001404335#ARB69_RS00040
RRunclassifiedCurrent focus
11 531-13 162 nt · Reverse (-)
ARB69_RS00045GCF_001404335#ARB69_RS00045
HKClassic
13 155-14 984 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404335#ARB69_RS00040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0083713
Simplified PFAM architecture for RROC_0083713
PFAM domain coverage: 193 / 543 aa (35.5%)
1 aa543 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[455-534]
- Domain count: 2
- Matched identifier: RROC_0083713
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 455-534 ; HTH_18 455-534
Cluster members and taxonomy
Representative gene: GCF_001404335#ARB69_RS00040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 482 · GCF_001404335
Assembly13470_2#95 · Scaffoldhaploid
Genome composition5 545 490 bp · 46,0% GCFaecalicatena contorta
Signal transduction countsGenes 185 · HK 91 · RR 90CheA 1 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFaecalicatena
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Faecalicatena
Related genes
Preview from the same derived genome key