1 Response_reg#1
2-114 aa · 113 aa · 50.4% of protein
Raw token
Response_reg:2:5.67e-31:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
C814_RS16730
Response regulator OmpR family
Anaerotruncus sp. G3(2012) · GCF_000403395
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000403395#C814_RS16730Stable P2CS identifier used across views.
GenomeGCF_000403395Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Anaerotruncus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 224 aa (83.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:5.23e-30:220:77:77- Raw architecture: Response_reg:2:5.67e-31:114:113:111#Trans_reg_C:147:5.23e-30:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000403395::NZ_KE159675.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span310307-312672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagC814_01896RefSeq proteinWP_016316576.1
Context group ID
GCF_000403395::NZ_KE159675.1::G00029Context members
C814_RS16725C814_RS16730
Partner locus tags
C814_RS16725C814_RS16730
Partner old locus tags
C814_01895C814_01896
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016316576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagC814_RS16730Primary locus identifier stored in the genes table.
Old locus tagC814_01896Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE159675.1Sequence record reported by the local genomic context database.
Genomic interval311 998-312 672 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span310 307-312 672 ntGCF_000403395::NZ_KE159675.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000403395::NZ_KE159675.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE159675.1All displayed genes belong to this local TCS context.
Neighborhood span310 307-312 672 nt2 366 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
310 307 nt312 672 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
C814_RS16725GCF_000403395#C814_RS16725
HKClassic
310 307-312 001 nt · Reverse (-)
C814_RS16730GCF_000403395#C814_RS16730
RROmpRCurrent focus
311 998-312 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000403395#C814_RS16730The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1531495
Simplified PFAM architecture for RROC_1531495
PFAM domain coverage: 185 / 224 aa (82.6%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1531495
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000403395#C814_RS16730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 235 835 · GCF_000403395
AssemblyAnae_bact_G3_V1 · Scaffoldhaploid
Genome composition3 620 383 bp · 54,5% GCAnaerotruncus sp. G3(2012)
Signal transduction countsGenes 69 · HK 29 · RR 38CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusAnaerotruncus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Anaerotruncus
Related genes
Preview from the same derived genome key